CX303398

Overview
NameCX303398
Unique NameCX303398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX303398_ssr546 microsatellite CX303398_ssr546:546..555. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5035 contig Csv1_Contig5035:1..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX303398 vs. ExPASy Swiss-Prot
Match: Y3475_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.671e-23
Identity = 56/139 (40.29%), Postives = 82/139 (58.99%), Query Frame = 2
Query:   38 NQSSSIGLKGTVGYAPPEYGMGSRVSTYGDVYSYGILLLETFTGKRPTSDIFAEGLDLHNFVKNALPEQISEVLDPLFVXXXXXXXXXXXXKLKQDQVQESLATILKIGVACSVESPRERMDISDVVNNLQKVKSTLLR 454
            NQ SS G++GT+GYA PEYG+G + S  GDVYS+GILLLE FTGKRPT+++F     L+++ K+ALPE+I +++D   +                  V E L  + ++G+ C  ESP  R+  S VV  L  ++    +
Sbjct:  874 NQLSSAGVRGTIGYAAPEYGVGGQPSINGDVYSFGILLLEMFTGKRPTNELFGGNFTLNSYTKSALPERILDIVDESILHIGLRVGF---------PVVECLTMVFEVGLRCCEESPMNRLATSIVVKELISIRERFFK 1003          
BLAST of CX303398 vs. ExPASy Swiss-Prot
Match: EFR_ARATH (LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.667e-21
Identity = 54/135 (40.00%), Postives = 76/135 (56.30%), Query Frame = 2
Query:   38 NQSSSIGLKGTVGYAPPEYGMGSRVSTYGDVYSYGILLLETFTGKRPTSDIFAEGLDLHNFVKNALPEQISEVLDPLFVXXXXXXXXXXXXKLKQDQVQESLATILKIGVACSVESPRERMDISDVVNNLQKVKS 442
            NQ SS G++GT+GYA PEYGMG + S  GDVYS+GILLLE F+GK+PT + FA   +LH++ K+ L    S                        + + E L  +L++G+ CS E PR+RM   + V  L  ++S
Sbjct:  884 NQFSSAGVRGTIGYAAPEYGMGGQPSIQGDVYSFGILLLEMFSGKKPTDESFAGDYNLHSYTKSILSGCTSSG--------------------GSNAIDEGLRLVLQVGIKCSEEYPRDRMRTDEAVRELISIRS 998          
BLAST of CX303398 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = 2
Query:   59 LKGTVGYAPPEYGMGSRVSTYGDVYSYGILLLETFTGKRPTSDIF--AEGLDLHNFVKNALPE-QISEVLDPLFVXXXXXXXXXXXXKLKQDQVQESLATILKIGVACSVESPRERMDISDVVNNLQKV 436
            + GT GY PPEYG  +R +T GDVYS+G++LLE  TGK PT   F  +EG +L  +    + + +  +V+DPL V             LK  Q++     +L+I + C  E+P +R ++ DV+  L+++
Sbjct: 1079 IAGTFGYIPPEYGQSARATTKGDVYSFGVILLELVTGKEPTGPDFKESEGGNLVGWAIQKINQGKAVDVIDPLLV----------SVALKNSQLR-----LLQIAMLCLAETPAKRPNMLDVLKALKEI 1192          
BLAST of CX303398 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.956e-12
Identity = 49/158 (31.01%), Postives = 79/158 (50.00%), Query Frame = 2
Query:    2 RVTRF-IPEAIRSNQSSSIGLKGTVGYAPPEYGMGSRVSTYGDVYSYGILLLETFTGKRPTSDIFAEGLDLHNFVKNAL--PEQISEVLDPLFVXXXXXXXXXXXXKLKQDQVQESLATILKIGVACSVESPRERMDISDVVNNLQKVKSTLLRCGIN 466
            RV  F + + I++++S S+ + G+ GY  PEY    +V    D+YSYG++LLE  TGKR     F EG  + ++V++ L   E + EVLD                      ++E +  +L+I + C+  SP +R  + DV+  LQ+ K      G N
Sbjct:  867 RVADFGVAKLIQTDESMSV-VAGSYGYIAPEYAYTLQVDKKSDIYSYGVILLEIITGKRSVEPEFGEGNSIVDWVRSKLKTKEDVEEVLDKSMGRSC-------------SLIREEMKQMLRIALLCTSRSPTDRPPMRDVLLILQEAKPKRKTVGDN 1010          
BLAST of CX303398 vs. ExPASy Swiss-Prot
Match: BRI1_ARATH (Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 47/129 (36.43%), Postives = 64/129 (49.61%), Query Frame = 2
Query:   59 LKGTVGYAPPEYGMGSRVSTYGDVYSYGILLLETFTGKRPTSDIFAEGLDLHNFVKNALPEQISEVLDPLFVXXXXXXXXXXXXKLKQDQVQE-SLATILKIGVACSVESPRERMDISDVVNNLQKVKS 442
            L GT GY PPEY    R ST GDVYSYG++LLE  TGKRPT        +L  +VK     +IS+V DP                +K+D   E  L   LK+ VAC  +    R  +  V+   +++++
Sbjct: 1046 LAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSPDFGDNNLVGWVKQHAKLRISDVFDP--------------ELMKEDPALEIELLQHLKVAVACLDDRAWRRPTMVQVMAMFKEIQA 1160          
BLAST of CX303398 vs. ExPASy Swiss-Prot
Match: IKU2_ARATH (Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.502e-11
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   59 LKGTVGYAPPEYGMGSRVSTYGDVYSYGILLLETFTGKRPTSDIFAEGLDLHNFVKNALPEQISEVLDPLFVXXXXXXXXXXXXKLKQDQVQESLATILKIGVACSVESPRERMDISDVVNNLQKVK 439
            +KGT+GY  PEY   ++V+   DVYS+G++L+E  TGK+P    F E  D+  +V +   E   E++  L                 +D+ +E    +L I + C+ +SP+ R  +  VV+ L+K++
Sbjct:  853 VKGTLGYIAPEYAYTTKVNEKSDVYSFGVVLMELVTGKKPLETDFGENNDIVMWVWSVSKETNREMMMKLIDTSI------------EDEYKEDALKVLTIALLCTDKSPQARPFMKSVVSMLEKIE 967          
BLAST of CX303398 vs. ExPASy Swiss-Prot
Match: Y1848_ARATH (Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.268e-11
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 2
Query:   44 SSSIGLKGTVGYAPPEYGMGSRVSTYGDVYSYGILLLETFTGKRPTSDIF-AEGLDLHNFVKN-ALPEQISEVLDPLFVXXXXXXXXXXXXKLKQDQVQESLATILKIGVACSVESPRERMDISDVVNNLQKVK 439
            SS+       GY  PE     RVS  GDVYS+G++LLE  TGK P++ +   EG+DL  +VK+ A  E   EV D   +             L  D+ +E +A ++++G+ C+ + P +R ++S+VV  ++ ++
Sbjct:  523 SSATNPNRATGYRAPEVTDPKRVSQKGDVYSFGVVLLELITGKAPSNSVMNEEGVDLPRWVKSVARDEWRREVFDSELL------------SLATDE-EEMMAEMVQLGLECTSQHPDQRPEMSEVVRKMENLR 643          
BLAST of CX303398 vs. ExPASy Swiss-Prot
Match: Y3288_ARATH (Probable inactive receptor kinase At3g02880 OS=Arabidopsis thaliana GN=At3g02880 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 40/123 (32.52%), Postives = 66/123 (53.66%), Query Frame = 2
Query:   74 GYAPPEYGMGSRVSTYGDVYSYGILLLETFTGKRPT-SDIFAEGLDLHNFVKNALPEQI-SEVLDPLFVXXXXXXXXXXXXKLKQDQVQESLATILKIGVACSVESPRERMDISDVVNNLQKV 436
            GY  PE     ++S   DVYS+G+L+LE  TGK PT   +  EG+DL  +V++   +Q  S+VLDP                  Q +  E++  +LKIG++C+ + P  R  +++V   +++V
Sbjct:  506 GYRAPEITDARKISQKADVYSFGVLILELLTGKSPTHQQLNEEGVDLPRWVQSVTEQQTPSDVLDPELTRY-------------QPEGNENIIRLLKIGMSCTAQFPDSRPSMAEVTRLIEEV 615          
BLAST of CX303398 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 39/120 (32.50%), Postives = 62/120 (51.67%), Query Frame = 2
Query:   65 GTVGYAPPEYGMGSRVSTYGDVYSYGILLLETFTGKRPTSDIFAEGLDLHNFVKNALPEQ--ISEVLDPLFVXXXXXXXXXXXXKLKQDQVQESLATILKIGVACSVESPRERMDISDVV 418
            G+ GY  PEY    +V+   D+YS+G++LLE  TGK P   +  +G DL  + +N + +    SE+LDP               K++ D +   + T+ KI V C+  SP +R  + +VV
Sbjct:  990 GSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELLTGKAPVQPL-EQGGDLATWTRNHIRDHSLTSEILDPYLT------------KVEDDVILNHMITVTKIAVLCTKSSPSDRPTMREVV 1096          
BLAST of CX303398 vs. ExPASy Swiss-Prot
Match: PSYR1_ARATH (Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 39/134 (29.10%), Postives = 69/134 (51.49%), Query Frame = 2
Query:   59 LKGTVGYAPPEYGMGSRVSTYGDVYSYGILLLETFTGKRPTSDIFAEGLD------LHNFVKNALPEQISEVLDPLFVXXXXXXXXXXXXKLKQDQVQESLATILKIGVACSVESPRERMDISDVVNNLQKVKS 442
            L GT+GY PPEYG     +  GDVYS+G+++LE  TGKRP  ++F   +       +H   ++  PE++ + L                  L++   +E++  +L I   C  ++P +R +I  VV+ L+ +++
Sbjct:  965 LVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGKRP-MEVFRPKMSRELVAWVHTMKRDGKPEEVFDTL------------------LRESGNEEAMLRVLDIACMCVNQNPMKRPNIQQVVDWLKNIEA 1079          
The following BLAST results are available for this feature:
BLAST of CX303398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
Y3475_ARATH1.671e-2340.29Probable LRR receptor-like serine/threonine-protei... [more]
EFR_ARATH2.667e-2140.00LRR receptor-like serine/threonine-protein kinase ... [more]
EXS_ARATH1.567e-1335.66Leucine-rich repeat receptor protein kinase EXS OS... [more]
Y5148_ARATH2.956e-1231.01Probable leucine-rich repeat receptor-like protein... [more]
BRI1_ARATH8.600e-1236.43Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidops... [more]
IKU2_ARATH2.502e-1130.71Receptor-like protein kinase HAIKU2 OS=Arabidopsis... [more]
Y1848_ARATH4.268e-1132.84Probable inactive receptor kinase At1g48480 OS=Ara... [more]
Y3288_ARATH7.280e-1132.52Probable inactive receptor kinase At3g02880 OS=Ara... [more]
Y2317_ARATH7.280e-1132.50Probable leucine-rich repeat receptor-like protein... [more]
PSYR1_ARATH7.280e-1129.10Tyrosine-sulfated glycopeptide receptor 1 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC08030G10SK PhyRootSw1 Citrus sinensis cDNA clone C08030G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303398 ID=CX303398; Name=CX303398; organism=Citrus sinensis; type=EST; length=648bp
GAGGGTTACAAGGTTTATTCCGGAAGCTATCCGTTCCAATCAAAGTAGCT
CAATTGGACTGAAAGGAACCGTTGGGTATGCTCCACCAGAATATGGCATG
GGAAGTCGGGTTTCAACATATGGTGATGTGTACAGCTATGGGATCCTCTT
GCTGGAAACTTTTACAGGGAAAAGGCCTACCAGTGACATATTTGCGGAAG
GTTTGGACCTCCACAATTTTGTTAAAAACGCATTGCCTGAACAAATATCA
GAAGTTTTAGACCCACTCTTTGTTACTGGAGGAGAAGAAGGAGAAGGAAC
AGCTGAAGAAAAACTTAAACAGGACCAAGTACAAGAGAGTCTGGCTACAA
TACTCAAAATTGGAGTTGCTTGTTCAGTAGAATCCCCCAGAGAACGGATG
GACATCAGTGATGTTGTAAACAATCTGCAGAAAGTCAAAAGCACTCTTCT
TCGATGTGGGATTAATTAATGCTCAACTCAAGATGCAGGCAAATAGCAGT
TATCTTTCACTGTTGTTTCAGCGAGTTGACTGCAAGTAATAAGAAATATA
TATATGTCAGCACGAAAATGTTCCATGAACATTAAATTACAGCAATAAAA
CCAGGCCATCTTTATTGATCTAAGTTTTTACTAAAAAAAAAAAAAAAA
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