CX303395

Overview
NameCX303395
Unique NameCX303395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303395 vs. ExPASy Swiss-Prot
Match: NNTM_MOUSE (NAD(P) transhydrogenase, mitochondrial OS=Mus musculus GN=Nnt PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.078e-29
Identity = 64/104 (61.54%), Postives = 77/104 (74.04%), Query Frame = 2
Query:   11 AEFGTRPYDMVFXXXXXXXXXXHVDVTMVIGANDTVNSAAEEDPTSAIAGMPVIQVWKSKHTIFMKRSMASGYAGVDNPVFYKGNTDMLLGDAKKTCEAIRAEL 322
            AE G  PYD+V             D+ +VIGANDTVNSAA+EDP S IAGMPV++VWKSK  I MKRS+  GYA VDNP+FYK NT MLLGDAKKTC+A++A++
Sbjct:  978 AEAGV-PYDIVLEMDEINSDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKV 1080          
BLAST of CX303395 vs. ExPASy Swiss-Prot
Match: NNTM_HUMAN (NAD(P) transhydrogenase, mitochondrial OS=Homo sapiens GN=NNT PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.078e-29
Identity = 64/104 (61.54%), Postives = 77/104 (74.04%), Query Frame = 2
Query:   11 AEFGTRPYDMVFXXXXXXXXXXHVDVTMVIGANDTVNSAAEEDPTSAIAGMPVIQVWKSKHTIFMKRSMASGYAGVDNPVFYKGNTDMLLGDAKKTCEAIRAEL 322
            AE G  PYD+V             D+ +VIGANDTVNSAA+EDP S IAGMPV++VWKSK  I MKRS+  GYA VDNP+FYK NT MLLGDAKKTC+A++A++
Sbjct:  978 AEAGV-PYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKV 1080          
BLAST of CX303395 vs. ExPASy Swiss-Prot
Match: NNTM_BOVIN (NAD(P) transhydrogenase, mitochondrial OS=Bos taurus GN=NNT PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.078e-29
Identity = 64/104 (61.54%), Postives = 77/104 (74.04%), Query Frame = 2
Query:   11 AEFGTRPYDMVFXXXXXXXXXXHVDVTMVIGANDTVNSAAEEDPTSAIAGMPVIQVWKSKHTIFMKRSMASGYAGVDNPVFYKGNTDMLLGDAKKTCEAIRAEL 322
            AE G  PYD+V             D+ +VIGANDTVNSAA+EDP S IAGMPV++VWKSK  I MKRS+  GYA VDNP+FYK NT MLLGDAKKTC+A++A++
Sbjct:  978 AEAGV-PYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKV 1080          
BLAST of CX303395 vs. ExPASy Swiss-Prot
Match: PNTB_HAEIN (NAD(P) transhydrogenase subunit beta OS=Haemophilus influenzae GN=pntB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.184e-24
Identity = 55/94 (58.51%), Postives = 64/94 (68.09%), Query Frame = 2
Query:   29 PYDMVFXXXXXXXXXXHVDVTMVIGANDTVNSAAEEDPTSAIAGMPVIQVWKSKHTIFMKRSMASGYAGVDNPVFYKGNTDMLLGDAKKTCEAI 310
            PYD+V             DV +VIGANDTVN AA EDP S IAGMPV++VWK+++ I  KRSMA GYAGV NP+F+K NT ML GDAK   E I
Sbjct:  377 PYDVVLEMDEINDDFADTDVVLVIGANDTVNPAAMEDPNSPIAGMPVLEVWKAQNVIVFKRSMAVGYAGVQNPLFFKENTQMLFGDAKDRVEDI 470          
BLAST of CX303395 vs. ExPASy Swiss-Prot
Match: PNTB_SHIFL (NAD(P) transhydrogenase subunit beta OS=Shigella flexneri GN=pntB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.155e-23
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = 2
Query:   29 PYDMVFXXXXXXXXXXHVDVTMVIGANDTVNSAAEEDPTSAIAGMPVIQVWKSKHTIFMKRSMASGYAGVDNPVFYKGNTDMLLGDAKKTCEAI 310
            PYD+V             D  +VIGANDTVN AA++DP S IAGMPV++VWK+++ I  KRSM +GYAGV NP+F+K NT ML GDAK + +AI
Sbjct:  365 PYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAI 458          
BLAST of CX303395 vs. ExPASy Swiss-Prot
Match: PNTB_ECOLI (NAD(P) transhydrogenase subunit beta OS=Escherichia coli (strain K12) GN=pntB PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.155e-23
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = 2
Query:   29 PYDMVFXXXXXXXXXXHVDVTMVIGANDTVNSAAEEDPTSAIAGMPVIQVWKSKHTIFMKRSMASGYAGVDNPVFYKGNTDMLLGDAKKTCEAI 310
            PYD+V             D  +VIGANDTVN AA++DP S IAGMPV++VWK+++ I  KRSM +GYAGV NP+F+K NT ML GDAK + +AI
Sbjct:  365 PYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAI 458          
BLAST of CX303395 vs. ExPASy Swiss-Prot
Match: PNTB_ECOL6 (NAD(P) transhydrogenase subunit beta OS=Escherichia coli O6 GN=pntB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.155e-23
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = 2
Query:   29 PYDMVFXXXXXXXXXXHVDVTMVIGANDTVNSAAEEDPTSAIAGMPVIQVWKSKHTIFMKRSMASGYAGVDNPVFYKGNTDMLLGDAKKTCEAI 310
            PYD+V             D  +VIGANDTVN AA++DP S IAGMPV++VWK+++ I  KRSM +GYAGV NP+F+K NT ML GDAK + +AI
Sbjct:  365 PYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAI 458          
BLAST of CX303395 vs. ExPASy Swiss-Prot
Match: PNTB_ECO57 (NAD(P) transhydrogenase subunit beta OS=Escherichia coli O157:H7 GN=pntB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.155e-23
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = 2
Query:   29 PYDMVFXXXXXXXXXXHVDVTMVIGANDTVNSAAEEDPTSAIAGMPVIQVWKSKHTIFMKRSMASGYAGVDNPVFYKGNTDMLLGDAKKTCEAI 310
            PYD+V             D  +VIGANDTVN AA++DP S IAGMPV++VWK+++ I  KRSM +GYAGV NP+F+K NT ML GDAK + +AI
Sbjct:  365 PYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAI 458          
BLAST of CX303395 vs. ExPASy Swiss-Prot
Match: PNTB_RHORU (NAD(P) transhydrogenase subunit beta OS=Rhodospirillum rubrum GN=pntB PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.039e-20
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 2
Query:   29 PYDMVFXXXXXXXXXXHVDVTMVIGANDTVNSAAEEDPTSAIAGMPVIQVWKSKHTIFMKRSMASGYAGVDNPVFYKGNTDMLLGDAKKTCEAI 310
            PYD VF            DV  VIGAND  N AA+ DP+S I GMP++ V K+   +F+KRSMASGYAGV+N +F++ NT ML GDAKK  E I
Sbjct:  366 PYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQI 459          
BLAST of CX303395 vs. ExPASy Swiss-Prot
Match: PNTB_RHORT (NAD(P) transhydrogenase subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=pntB PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.039e-20
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 2
Query:   29 PYDMVFXXXXXXXXXXHVDVTMVIGANDTVNSAAEEDPTSAIAGMPVIQVWKSKHTIFMKRSMASGYAGVDNPVFYKGNTDMLLGDAKKTCEAI 310
            PYD VF            DV  VIGAND  N AA+ DP+S I GMP++ V K+   +F+KRSMASGYAGV+N +F++ NT ML GDAKK  E I
Sbjct:  366 PYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQI 459          
The following BLAST results are available for this feature:
BLAST of CX303395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
NNTM_MOUSE1.078e-2961.54NAD(P) transhydrogenase, mitochondrial OS=Mus musc... [more]
NNTM_HUMAN1.078e-2961.54NAD(P) transhydrogenase, mitochondrial OS=Homo sap... [more]
NNTM_BOVIN1.078e-2961.54NAD(P) transhydrogenase, mitochondrial OS=Bos taur... [more]
PNTB_HAEIN5.184e-2458.51NAD(P) transhydrogenase subunit beta OS=Haemophilu... [more]
PNTB_SHIFL1.155e-2355.32NAD(P) transhydrogenase subunit beta OS=Shigella f... [more]
PNTB_ECOLI1.155e-2355.32NAD(P) transhydrogenase subunit beta OS=Escherichi... [more]
PNTB_ECOL61.155e-2355.32NAD(P) transhydrogenase subunit beta OS=Escherichi... [more]
PNTB_ECO571.155e-2355.32NAD(P) transhydrogenase subunit beta OS=Escherichi... [more]
PNTB_RHORU2.039e-2053.19NAD(P) transhydrogenase subunit beta OS=Rhodospiri... [more]
PNTB_RHORT2.039e-2053.19NAD(P) transhydrogenase subunit beta OS=Rhodospiri... [more]
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Properties
Property NameValue
Genbank descriptionC08030G07SK PhyRootSw1 Citrus sinensis cDNA clone C08030G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303395 ID=CX303395; Name=CX303395; organism=Citrus sinensis; type=EST; length=616bp
GAGGCCTCGTGCCGAATTCGGCACGAGGCCTTATGATATGGTTTTTGAAA
TGGAAGAAATTAATGAAGAGATGGAGCATGTTGATGTAACCATGGTTATC
GGTGCCAACGATACGGTAAACAGTGCTGCTGAGGAAGATCCTACTTCTGC
CATTGCCGGCATGCCAGTTATTCAAGTTTGGAAATCAAAGCACACCATTT
TCATGAAGCGTTCCATGGCAAGCGGATATGCTGGTGTTGACAATCCAGTT
TTCTATAAGGGCAACACTGATATGTTGTTAGGGGATGCGAAGAAGACCTG
CGAAGCTATTCGTGCTGAGTTAGTGAAATAAAGCGAACTATTACTTTTTA
ATAAGAAAAGTTGATTGAAATTGCTGAATTCCTGCTGTTTCCTGCTTGTT
TGGTGAATAATTCGTCGCCAAATTCGTTGTATACGTGAGGATTAATATTT
AATTTATTTTTCTTCAATTCCTCCTTGCATTTTTATATGTCGATACCAAA
GCATCAACATTCTTAGATTCACCCTTCAATGTAAGACCAGTTTCTTTCAT
AGATTCACAATAAAATCTCTATATAAAAATTAATATATAATTCATCTTCA
AAAAAAAAAAAAAAAA
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