EY692171

Overview
NameEY692171
Unique NameEY692171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length347
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692171 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.535e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 2
Query:    2 TFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 100
            TFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  402 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434          
BLAST of EY692171 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.311e-11
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 2
Query:    2 TFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 100
            TF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  402 TFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434          
BLAST of EY692171 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.311e-11
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 2
Query:    2 TFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 100
            TFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  402 TFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 434          
BLAST of EY692171 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.311e-11
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 2
Query:    2 TFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 100
            TF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  402 TFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434          
BLAST of EY692171 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.311e-11
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 2
Query:    2 TFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 100
            TFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  402 TFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 434          
BLAST of EY692171 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.311e-11
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 2
Query:    2 TFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 100
            TFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDP
Sbjct:  402 TFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDP 434          
BLAST of EY692171 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.324e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 2
Query:    2 TFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 100
            TFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  402 TFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434          
BLAST of EY692171 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.376e-11
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 2
Query:    2 TFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 100
            TFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDP
Sbjct:  402 TFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDP 434          
BLAST of EY692171 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.634e-11
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 2
Query:    2 TFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 100
            TF  YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  402 TFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434          
The following BLAST results are available for this feature:
BLAST of EY692171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
EF1A_MAIZE2.535e-1196.97Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_VICFA3.311e-1193.94Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_SOYBN3.311e-1193.94Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_PEA3.311e-1193.94Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_ORYSJ3.311e-1193.94Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_ARATH3.311e-1193.94Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_MANES4.324e-1196.97Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_TOBAC7.376e-1190.91Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A2_DAUCA9.634e-1193.94Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-097-G05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692171 ID=EY692171; Name=EY692171; organism=Citrus sinensis; type=EST; length=347bp
GACCTTCTCCGACTACCCACCCCTTGGTCGTTTTGCTGTTAGGGACATGC
GTCAGACTGTAGCTGTTGGTGTGATCAAGAGTGTTGAAAAGAAGGATCCA
TCGGGTGCCAAGGTCACCAAGTCTGCTGCCAAGAAGAAGTGAGGAGTTTT
TTGGGATCTATCTGCTATAGTTAGCTTTTATTTTCTCTGTTTATGCTATT
TTTGTCATGTTTTAGTTTGTTTTACGGTAGACTTCATTTTAATTCTCTGA
ATTTGGTTTTATATCATTGAGTTTTTTTTGGTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGG
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