CV712692

Overview
NameCV712692
Unique NameCV712692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712692_ssr414 microsatellite CV712692_ssr414:414..425. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV712692 vs. ExPASy Swiss-Prot
Match: PSK6_ARATH (Putative phytosulfokines 6 OS=Arabidopsis thaliana GN=PSK6 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.139e-11
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 3 
Query:  216 KQGQEEVKLKELSSEVSLQEMEKSESMTLMGMEACDENGDEECLKRRIIAEAHLDYIYTQHHK 404
            ++G+E+ ++  L S  S++E   ++   LMGME C E GDEECL+RR++ E+HLDYIYTQHHK
Sbjct:   22 RRGKEDQEINPLVSATSVEEDSVNK---LMGMEYCGE-GDEECLRRRMMTESHLDYIYTQHHK 80
The following BLAST results are available for this feature:
BLAST of CV712692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSK6_ARATH7.139e-1152.38Putative phytosulfokines 6 OS=Arabidopsis thaliana... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001M07_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712692 ID=CV712692; Name=CV712692; organism=Citrus sinensis; type=EST; length=643bp
CTTGACTTGCATGTATTTATATCCATCCTCTACCTACCTCTTCTTTCACC
ACCTCAACTTCCAACAATTCATATTCAACCCCTTTGATCTCTTCTCTCTT
TTTGTGTGTGCTGTGTTAAGCAGACATCATGAAGCGCAGCTTTCAATTCA
GTGCTTTTCTCCTCCTCATCCTTCTCATTTTCTCATCCGAAATCTCTGCC
CGTTTCATGGGAACCAAACAAGGACAAGAGGAGGTAAAGCTTAAGGAGCT
CAGTAGTGAAGTTTCTCTTCAGGAGATGGAGAAAAGTGAATCAATGACTC
TAATGGGAATGGAGGCATGTGATGAGAATGGAGATGAAGAATGCTTGAAG
AGAAGAATCATAGCAGAGGCTCACTTGGACTACATCTACACCCAGCATCA
CAAGCCTTGAAGCTAATTAATTAATTTCAGGGCTTCTAGCTATCATTCAG
CTTAGTCTTTTATTAAAATTTATAAAATATGTACTGCTCTGAATGAATGC
CTCTCAACCTATTGAGTCTTAGGTTCCTTTTTCTCTTGTGATATACAATT
ATGTAACTTTTACACCTGGCTAATTAGCTACTGCCAGCTATGTCTATTGT
AGTATGAGCATCTGCACTCTCTTTGATAAAAAAAAAAAAAAAA
back to top