CV712691

Overview
NameCV712691
Unique NameCV712691
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712691_ssr187 microsatellite CV712691_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV712691 vs. ExPASy Swiss-Prot
Match: PSK6_ARATH (Putative phytosulfokines 6 OS=Arabidopsis thaliana GN=PSK6 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = -2 
Query:  209 KQGQEEVKLKELSSEVSLQEMEKSESMTLMGMEACDENGDEECLKRRIIAEAHLDYIYTQHHK 397
            ++G+E+ ++  L S  S++E   ++   LMGME C E GDEECL+RR++ E+HLDYIYTQHHK
Sbjct:   22 RRGKEDQEINPLVSATSVEEDSVNK---LMGMEYCGE-GDEECLRRRMMTESHLDYIYTQHHK 80
The following BLAST results are available for this feature:
BLAST of CV712691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSK6_ARATH6.530e-1152.38Putative phytosulfokines 6 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M07_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712691 ID=CV712691; Name=CV712691; organism=Citrus sinensis; type=EST; length=611bp
ATGCTCATACTACAATAGACATAGCTCGGCAGTAGCTAATTAGCCAGGTG
TAAAAGTTACATAATTGTATATCACAAGAGAAAAAGGAACCTAAGACTCA
ATAGGTTGAGAGGCATTCATTCAGAGCAGTACATATTTTATAAATTTTAA
TAAAAGACTAAGCTGAATGATAGCTAGAAGCCCTGAAATTAATTAATTAG
CTTCAAGGCTTGTGATGCTGGGTGTAGATGTAGTCCAAGTGAGCCTCTGC
TATGATTCTTCTCTTCAAGCATTCTTCATCTCCATTCTCATCACATGCCT
CCATTCCCATTAGAGTCATTGATTCACTTTTCTCCATCTCCTGAAGAGAA
ACTTCACTACTGAGCTCCTTAAGCTTTACCTCCTCTTGTCCTTGTTTGGT
TCCCATGAAACGGGCAGAGATTTCGGATGAGAAAATGAGAAGGATGAGGA
GGAGAAAAGCACTGAATTGAAAGCTGCGCTTCATGATGTCTGCTTAACAC
AGCACACACAAAAAGAGAGAAGAGATCAAAGGGGTTGAATATGAATTGTT
GGAAGTTGAGGTGGTGAAAGAAGAGGTAGGTAGAGGATGGATATAAATAC
ATGCAAGTCAA
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