CV712676

Overview
NameCV712676
Unique NameCV712676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712676_ssr590 microsatellite CV712676_ssr590:590..601. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9428 contig Csv1_Contig9428:613..1244. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 14339_ARATH (14-3-3-like protein GF14 mu OS=Arabidopsis thaliana GN=GRF9 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.810e-42
Identity = 84/97 (86.60%), Postives = 91/97 (93.81%), Query Frame = 3
Query:    6 ASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 296
            A+T AEA+L PTHPIRLGLALNFSVFYYEIMN+PERACHLAKQAFDEAISELDTL+EESYKDSTLIMQLLRDNLTLWTSDI E+GGD+A K + SAK
Sbjct:  158 ATTAAEAKLPPTHPIRLGLALNFSVFYYEIMNAPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDISEEGGDDAHKTNGSAK 254          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 1433C_SOYBN (14-3-3-like protein C OS=Glycine max GN=GF14C PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.294e-41
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 3
Query:    6 ASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMD 284
            ASTTAEAEL+ THPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG  E QK+D
Sbjct:  158 ASTTAEAELASTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG--EEQKVD 248          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 1433B_VICFA (14-3-3-like protein B OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.883e-41
Identity = 84/98 (85.71%), Postives = 93/98 (94.90%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 296
            +A+T AEAEL PTHPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAISELDTL+EESYKDSTLIMQLLRDNLTLWTSDIPED G+++QK + +AK
Sbjct:  157 SATTAAEAELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPED-GEDSQKANGTAK 253          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 1433D_SOYBN (14-3-3-like protein D OS=Glycine max GN=GF14D PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.423e-41
Identity = 83/98 (84.69%), Postives = 93/98 (94.90%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 296
            +A+  AEA+L PTHPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAISELDTL+EESYKDSTLIMQLLRDNLTLWTSDIPED G++AQK++ +AK
Sbjct:  157 SATAAAEADLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPED-GEDAQKVNGTAK 253          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 14339_SOLLC (14-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 8.389e-41
Identity = 83/98 (84.69%), Postives = 92/98 (93.88%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 296
            AA+T AEAEL+PTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELD+L+E+SYKDSTLIMQLLRDNLTLWTSD+PED  ++AQK D + K
Sbjct:  157 AATTAAEAELAPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLPED-AEDAQKGDATNK 253          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 14312_ARATH (14-3-3-like protein GF14 iota OS=Arabidopsis thaliana GN=GRF12 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.066e-39
Identity = 80/96 (83.33%), Postives = 86/96 (89.58%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDIS 290
            AA+  A  EL  THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI+ELDTLSEESYKDSTLIMQLLRDNLTLWTSD+PEDGG++  K + S
Sbjct:  160 AATQAASTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEDNIKTEES 255          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 14333_ORYSJ (14-3-3-like protein GF14-C OS=Oryza sativa subsp. japonica GN=GF14C PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.090e-38
Identity = 76/92 (82.61%), Postives = 85/92 (92.39%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 278
            AA   A A+L+PTHPIRLGLALNFSVFYYEI+NSP++AC+LAKQAFDEAISELDTL EESYKDSTLIMQLLRDNLTLWTSD+ EDGGDE ++
Sbjct:  155 AAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKE 246          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 14337_SOLLC (14-3-3 protein 7 OS=Solanum lycopersicum GN=TFT7 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 8.681e-38
Identity = 78/95 (82.11%), Postives = 86/95 (90.53%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG----GDEAQ 275
            AA+ TA ++L+PTHPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAI+ELD+LSEESYKDSTLIMQLLRDNLTLWTSD+ E G    GDE Q
Sbjct:  155 AATATASSDLAPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLEEGGEHSKGDERQ 249          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 1433_TOBAC (14-3-3-like protein OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.134e-37
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 3
Query:    3 AASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG----GDEAQ 275
            AA+ TA A+L+PTHPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAI+ELD+LSEESYKDSTLIMQLLRDN TLWTSD+ E G    GDE Q
Sbjct:  154 AATATASADLAPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNFTLWTSDLEEGGEHSKGDERQ 248          
BLAST of CV712676 vs. ExPASy Swiss-Prot
Match: 14338_SOLLC (14-3-3 protein 8 OS=Solanum lycopersicum GN=TFT8 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.481e-37
Identity = 79/97 (81.44%), Postives = 87/97 (89.69%), Query Frame = 3
Query:    6 ASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 296
            A+TTAEAEL  THPIRLGLALNFSVFYYEIMNSPERAC LAKQ FDEAISELD+L+E++YKD TLI+QLLRDNLTLWTSDIPED G+EA K D + K
Sbjct:  158 ATTTAEAELPITHPIRLGLALNFSVFYYEIMNSPERACQLAKQVFDEAISELDSLNEDNYKDGTLILQLLRDNLTLWTSDIPED-GEEAPKGDAANK 253          
The following BLAST results are available for this feature:
BLAST of CV712676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
14339_ARATH5.810e-4286.6014-3-3-like protein GF14 mu OS=Arabidopsis thalian... [more]
1433C_SOYBN1.294e-4192.4714-3-3-like protein C OS=Glycine max GN=GF14C PE=2... [more]
1433B_VICFA2.883e-4185.7114-3-3-like protein B OS=Vicia faba PE=2 SV=1[more]
1433D_SOYBN6.423e-4184.6914-3-3-like protein D OS=Glycine max GN=GF14D PE=2... [more]
14339_SOLLC8.389e-4184.6914-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 P... [more]
14312_ARATH2.066e-3983.3314-3-3-like protein GF14 iota OS=Arabidopsis thali... [more]
14333_ORYSJ5.090e-3882.6114-3-3-like protein GF14-C OS=Oryza sativa subsp. ... [more]
14337_SOLLC8.681e-3882.1114-3-3 protein 7 OS=Solanum lycopersicum GN=TFT7 P... [more]
1433_TOBAC1.134e-3782.1114-3-3-like protein OS=Nicotiana tabacum PE=2 SV=1[more]
14338_SOLLC1.481e-3781.4414-3-3 protein 8 OS=Solanum lycopersicum GN=TFT8 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L22_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712676 ID=CV712676; Name=CV712676; organism=Citrus sinensis; type=EST; length=632bp
AGGCAGCTTCTACTACCGCAGAAGCTGAATTGTCTCCTACCCACCCCATC
CGACTTGGTTTGGCCTTGAACTTCTCAGTTTTTTACTATGAGATTATGAA
CTCTCCTGAAAGGGCATGCCACCTTGCAAAGCAGGCCTTTGATGAAGCCA
TCTCAGAATTGGATACATTAAGTGAGGAATCTTACAAAGACAGCACGTTG
ATAATGCAGCTATTGAGGGACAACCTCACTCTTTGGACTTCTGACATACC
AGAGGATGGAGGTGATGAAGCCCAGAAAATGGACATCTCTGCTAAAGAGG
GTGAAGGTGAAGATTGAAGAAGCAGAGGTGGGTTTGTTTTCCTATTTTGG
AGCAGAGTTGCAATCTTTGTTGTTTTCTGTCCTCAGTGAACCAGCCAGGA
GCTTGGGAGCTCTAGCATATGATAGCAAGGAAGCTGCAATACCTTTATGA
CTCCCGGTGTTTTTCTTAGTTTACAAGAGACACTCAAGTACTGTTATTGT
GCTGTTCCTATAATGTGGGTGTTATCTTCACTGTCAAGAGTTTCATGATT
GGACTGCTTGTATCATTTGCATCCCAGAATCTTTTATATCTGCTGCTGCT
GATCAATTTGGACTTAGTGTTAAGACCAAAAA
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