CV712675

Overview
NameCV712675
Unique NameCV712675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712675_ssr38 microsatellite CV712675_ssr38:38..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9428 contig Csv1_Contig9428:610..1250. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712675 vs. ExPASy Swiss-Prot
Match: 14339_ARATH (14-3-3-like protein GF14 mu OS=Arabidopsis thaliana GN=GRF9 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.633e-39
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3
Query:  343 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 609
            L PTHPIRLGLALNFSVFYYEIMN+PERACHLAKQAFDEAISELDTL+EESYKDSTLIMQLLRDNLTLWTSDI E+GGD+A K + SAK
Sbjct:  166 LPPTHPIRLGLALNFSVFYYEIMNAPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDISEEGGDDAHKTNGSAK 254          
BLAST of CV712675 vs. ExPASy Swiss-Prot
Match: 1433D_SOYBN (14-3-3-like protein D OS=Glycine max GN=GF14D PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.803e-38
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = -3
Query:  343 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 609
            L PTHPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAISELDTL+EESYKDSTLIMQLLRDNLTLWTSDIPED G++AQK++ +AK
Sbjct:  166 LPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPED-GEDAQKVNGTAK 253          
BLAST of CV712675 vs. ExPASy Swiss-Prot
Match: 1433B_VICFA (14-3-3-like protein B OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.851e-38
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = -3
Query:  343 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 609
            L PTHPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAISELDTL+EESYKDSTLIMQLLRDNLTLWTSDIPED G+++QK + +AK
Sbjct:  166 LPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPED-GEDSQKANGTAK 253          
BLAST of CV712675 vs. ExPASy Swiss-Prot
Match: 1433C_SOYBN (14-3-3-like protein C OS=Glycine max GN=GF14C PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.993e-37
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = -3
Query:  355 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMD 609
            L+ THPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG  E QK+D
Sbjct:  166 LASTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG--EEQKVD 248          
BLAST of CV712675 vs. ExPASy Swiss-Prot
Match: 14312_ARATH (14-3-3-like protein GF14 iota OS=Arabidopsis thaliana GN=GRF12 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.993e-37
Identity = 76/87 (87.36%), Postives = 81/87 (93.10%), Query Frame = -3
Query:  349 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDIS 609
            L  THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI+ELDTLSEESYKDSTLIMQLLRDNLTLWTSD+PEDGG++  K + S
Sbjct:  169 LPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEDNIKTEES 255          
BLAST of CV712675 vs. ExPASy Swiss-Prot
Match: 14339_SOLLC (14-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.440e-37
Identity = 76/89 (85.39%), Postives = 84/89 (94.38%), Query Frame = -3
Query:  343 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 609
            L+PTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELD+L+E+SYKDSTLIMQLLRDNLTLWTSD+PED  ++AQK D + K
Sbjct:  166 LAPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLPED-AEDAQKGDATNK 253          
BLAST of CV712675 vs. ExPASy Swiss-Prot
Match: 14333_ORYSJ (14-3-3-like protein GF14-C OS=Oryza sativa subsp. japonica GN=GF14C PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.687e-36
Identity = 72/83 (86.75%), Postives = 80/83 (96.39%), Query Frame = -3
Query:  361 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 609
            L+PTHPIRLGLALNFSVFYYEI+NSP++AC+LAKQAFDEAISELDTL EESYKDSTLIMQLLRDNLTLWTSD+ EDGGDE ++
Sbjct:  164 LAPTHPIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKE 246          
BLAST of CV712675 vs. ExPASy Swiss-Prot
Match: 14331_ORYSJ (14-3-3-like protein GF14-A OS=Oryza sativa subsp. japonica GN=GF14A PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.759e-36
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = -3
Query:  370 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 609
            LSPTHPIRLGLALNFSVFYYEI+NSP+RAC LAKQAFDEAISELDTL EESYKDSTLIMQLLRDNLTLWTSD+ +DGGDE
Sbjct:  174 LSPTHPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGDE 253          
BLAST of CV712675 vs. ExPASy Swiss-Prot
Match: 1433_MESCR (14-3-3-like protein OS=Mesembryanthemum crystallinum GN=GBF PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.094e-35
Identity = 72/83 (86.75%), Postives = 79/83 (95.18%), Query Frame = -3
Query:  361 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 609
            L+PTHPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAFDEAISELDTL EESYKDSTLIMQLLRDNLTLWTSD  E+GGDE ++
Sbjct:  168 LAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEEGGDEIKE 250          
BLAST of CV712675 vs. ExPASy Swiss-Prot
Match: 1433_LILLO (14-3-3-like protein OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.094e-35
Identity = 72/83 (86.75%), Postives = 79/83 (95.18%), Query Frame = -3
Query:  361 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 609
            L+PTHPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAFDEAISELDTL EESYKDSTLIMQLLRDNLTLWTSDI E+ GDE ++
Sbjct:  169 LAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDINEEAGDEIKE 251          
The following BLAST results are available for this feature:
BLAST of CV712675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
14339_ARATH3.633e-3988.7614-3-3-like protein GF14 mu OS=Arabidopsis thalian... [more]
1433D_SOYBN1.803e-3888.7614-3-3-like protein D OS=Glycine max GN=GF14D PE=2... [more]
1433B_VICFA6.851e-3887.6414-3-3-like protein B OS=Vicia faba PE=2 SV=1[more]
1433C_SOYBN1.993e-3791.7614-3-3-like protein C OS=Glycine max GN=GF14C PE=2... [more]
14312_ARATH1.993e-3787.3614-3-3-like protein GF14 iota OS=Arabidopsis thali... [more]
14339_SOLLC4.440e-3785.3914-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 P... [more]
14333_ORYSJ1.687e-3686.7514-3-3-like protein GF14-C OS=Oryza sativa subsp. ... [more]
14331_ORYSJ3.759e-3691.2514-3-3-like protein GF14-A OS=Oryza sativa subsp. ... [more]
1433_MESCR1.094e-3586.7514-3-3-like protein OS=Mesembryanthemum crystallin... [more]
1433_LILLO1.094e-3586.7514-3-3-like protein OS=Lilium longiflorum PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L22_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712675 ID=CV712675; Name=CV712675; organism=Citrus sinensis; type=EST; length=641bp
CCCCCTTTTTTTGGTCTTACACTAAGTCCAAATTGATCAGCAGCAGCAGA
TATAAAAGATTCTGGGATGCAAATGATACAAGCAGTCCAATCATGAAACT
CTTGACAGTGAAGATAACACCCACATTATAGGAACAGCACAATAACAGTA
CTTGAGTGTCTCTTGTAAACTAAGAAAAACACCGGGAGTCATAAAGGTAT
TGCAGCTTCCTTGCTATCATATGCTAGAGCTCCCAAGCTCCTGGCTGGTT
CACTGAGGACAGAAAACAACAAAGATTGCAACTCTGCTCCAAAATAGGAA
AACAAACCCACCTCTGCTTCTTCAATCTTCACCTTCACCCTCTTTAGCAG
AGATGTCCATTTTCTGGGCTTCATCACCTCCATCCTCTGGTATGTCAGAA
GTCCAAAGAGTGAGGTTGTCCCTCAATAGCTGCATTATCAACGTGCTGTC
TTTGTAAGATTCCTCACTTAATGTATCCAATTCTGAGATGGCTTCATCAA
AGGCCTGCTTTGCAAGGTGGCATGCCCTTTCAGGAGAGTTCATAATCTCA
TAGTAAAAAACTGAGAAGTTCAAGGCCAAACCAAGTCGGATGGGGTGGGT
AGGAGACAATTCAGCTTCTGCGGTAGTAGAAGCTGCCTCCT
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