CV712671

Overview
NameCV712671
Unique NameCV712671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2437 contig Csv1_Contig2437:66..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712671 vs. ExPASy Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = -1
Query:  420 FYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRRSENR---KPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLV 683
            FY++YA  +GF  RV + RRS RDG ++ R+ VC KEGFR +  +R+++R   +PR +TR GCKA + VK + +GKW+V+ FVK+HNH LV
Sbjct:   88 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELV 178          
BLAST of CV712671 vs. ExPASy Swiss-Prot
Match: FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 38/87 (43.68%), Postives = 47/87 (54.02%), Query Frame = -1
Query:  423 FYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPL 683
            FY+AYA   GF +R     RS  DG V  RR VC+KEGF             +  +R GC A I V++  TGKWV+ +  KEHNH L
Sbjct:   58 FYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGF-------------QLNSRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131          
BLAST of CV712671 vs. ExPASy Swiss-Prot
Match: FRS7_ARATH (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 37/87 (42.53%), Postives = 48/87 (55.17%), Query Frame = -1
Query:  423 FYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPL 683
            +Y++YAT  GF +R     RS  DG V  RR VC+KEGF             +  +R GC A I V++  TGKWV+ +  KEHNH L
Sbjct:   43 YYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGF-------------QLNSRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDL 116          
BLAST of CV712671 vs. ExPASy Swiss-Prot
Match: FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 32/87 (36.78%), Postives = 53/87 (60.92%), Query Frame = -1
Query:  423 FYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPL 683
            FY  YA  +GF + + A RRS R GK +  ++ C++ G ++    ++    PR+  + GCKA + +K+++  KWV+  FVKEHNH +
Sbjct:   53 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKR---EKATAINPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEI 136          
The following BLAST results are available for this feature:
BLAST of CV712671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FRS5_ARATH3.839e-2150.55Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis tha... [more]
FRS12_ARATH1.238e-1143.68Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis th... [more]
FRS7_ARATH1.617e-1142.53Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis tha... [more]
FRS2_ARATH8.024e-1136.78Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L20_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712671 ID=CV712671; Name=CV712671; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTCATTAACTCTATATATTTTTCAGAAGCAAAGGACAAGTTGGCTC
AATCTACAAGTTCAGACAATCCTTCCTAAAAAGAAAAAGGCCTACTAGTT
TAATTCACAGTCATTAAACAGAAGCACAGAAAGAAAATTGGACGGAGAAA
TTTACAGTCTAATGGGGATTTTAGCAGTGTGAAGCTGCTATACGCTTGGC
CTCAATTTGCTTCACACTTTGAACTATGTCATCGATGTTCCTCGATAAGT
GATGAGAATGATTCTCCATATCTCTTAAAACCATTTCAAGCTGTTCTTGA
TATGCAGCAGACCGTTTTCGCTCCCGCTGTAACTCTGCTGTTAACTCCCG
AATCTTTACATCTTTCTCATCCGGAGTTTGAGATAGTAGCACACTTCGAC
GACCATTGGCAGGTATAGCTACCAGTGGGTGGTTGTGCTCCTTGACAAAT
CTAGTTACAACCCATTTTCCAGTTTTCTCCTTTTTCACCACTATCATTGC
CTTACAACCTTCTCTGGTGACTGCTCGAGGTTTCCTATTCTCACTTCTTC
TTGGTCTCAACTTGCGAAAACCCTCTTTATTACACACAAGTCGACGCCAA
ACAACCTTGCCATCACGCATTGATCGACGAAATGCATCAACACGCATAAT
GAAACCCATATGTGTGGCATATGCATCATAAAA
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