CV712668

Overview
NameCV712668
Unique NameCV712668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5376 contig Csv1_Contig5376:56..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712668 vs. ExPASy Swiss-Prot
Match: BEM46_SCHPO (Protein bem46 OS=Schizosaccharomyces pombe GN=bem46 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.928e-18
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = -2
Query:  365 AVGAVLTKNNPDKVAALILENTFTSILDMAGVLLPFLKWFIGGSGSKGPRILNFLVRSPWSTIDVVGEIKQ-PILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVEFPTGMHMDTWLAGGDQYWRSIQEFLAEH 769
            AV   LT  N D+++ALILENTFTSI DM   + P+     GGS      I++      WS+ D + +IK+ P+LFLSG +DE+VPP  M +L+    +  K  KF  FP   H DT L  GD Y++ I +FLAE+
Sbjct:  172 AVAIALTAKNQDRISALILENTFTSIKDMIPTVFPY-----GGS------IISRFCTEIWSSQDEIRKIKKLPVLFLSGEKDEIVPPPQMVLLFGLCGSAKK--KFHSFPKCTHNDTCL--GDGYFQVIADFLAEN 292          
BLAST of CV712668 vs. ExPASy Swiss-Prot
Match: YN60_YEAST (Uncharacterized membrane protein YNL320W OS=Saccharomyces cerevisiae GN=YNL320W PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.798e-13
Identity = 49/125 (39.20%), Postives = 63/125 (50.40%), Query Frame = -2
Query:  368 DKVAALILENTFTSILDMAGVLLPFLKWFIGGSGSKGPRILNFLVRSPWSTIDVVGEIKQ--PILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVEFPTGMHMDTWLAGGDQYWRSIQEFLAE 736
            D    +ILENTF SI  +   + P LK F              L    W++  ++G      P LFLSGL+DE+VPP HM+ LY    + NK  K  EFP G H DT +  G  YW  I++FL E
Sbjct:  172 DLCDGVILENTFLSIRKVIPYIFPLLKRF------------TLLCHEIWNSEGLMGSCSSETPFLFLSGLKDEIVPPFHMRKLYETCPSSNK--KIFEFPLGSHNDTIIQDG--YWDIIRDFLIE 280          
BLAST of CV712668 vs. ExPASy Swiss-Prot
Match: ABHDD_DANRE (Abhydrolase domain-containing protein 13 OS=Danio rerio GN=abhd13 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = -2
Query:  335 AVGAVLTKNNPDKVAALILENTFTSILDMAGVLLPFLKWFIGGSGSKGPRILN-FLVRSPWSTIDVVGEIKQPILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVEFPTGMHMDTWLAGGDQYWRSIQEFLAEHVRKKKESETS 769
            AV   L   NP +VAA+++ENTF SI  MA  L  F             R L  +  ++ + +   V   + P LF+SGL D+++PP  M+ LY  + +R K  +   FP G H DTW   G  Y+ ++++F+ E ++     ET+
Sbjct:  197 AVAIRLASCNPHRVAAIMVENTFLSIPHMAATLFSFFPM----------RYLPLWCYKNKFLSYRHVVPCRMPSLFISGLSDQLIPPVMMKQLYELSPSRTK--RLAIFPEGTHNDTWQCQG--YFSALEQFMKELLKSHAREETT 328          
BLAST of CV712668 vs. ExPASy Swiss-Prot
Match: ABHDD_CHICK (Abhydrolase domain-containing protein 13 OS=Gallus gallus GN=ABHD13 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 47/151 (31.13%), Postives = 76/151 (50.33%), Query Frame = -2
Query:  329 AVGAVLTKNNPDKVAALILENTFTSILDMAGVLLPFLKWFIGGSGSKGPRILN-FLVRSPWSTIDVVGEIKQPILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVEFPTGMHMDTWLAGGDQYWRSIQEFLAEHVRKKKESE---TSGN 769
            AV   L   N  +++A+++ENTF SI  MA  L  F             R L  +  ++ + +   + + + P LF+SGL D+++PP  M+ LY  + AR K  +   FP G H DTW   G  Y+ ++++F+ E ++     E   TS N
Sbjct:  197 AVAIHLASENSHRISAIMVENTFLSIPHMASTLFSFFPM----------RYLPLWCYKNKFLSYRKISQCRMPSLFISGLSDQLIPPVMMKQLYELSPARTK--RLAIFPDGTHNDTWQCQG--YFTALEQFIKEVIKSHSSEEMAKTSSN 333          
BLAST of CV712668 vs. ExPASy Swiss-Prot
Match: ABHDD_HUMAN (Abhydrolase domain-containing protein 13 OS=Homo sapiens GN=ABHD13 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.278e-12
Identity = 47/151 (31.13%), Postives = 76/151 (50.33%), Query Frame = -2
Query:  329 AVGAVLTKNNPDKVAALILENTFTSILDMAGVLLPFLKWFIGGSGSKGPRILN-FLVRSPWSTIDVVGEIKQPILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVEFPTGMHMDTWLAGGDQYWRSIQEFLAEHVRKKKESE---TSGN 769
            AV   L   N  +++A+++ENTF SI  MA  L  F             R L  +  ++ + +   + + + P LF+SGL D+++PP  M+ LY  + +R K  +   FP G H DTW   G  Y+ ++++F+ E V+     E   TS N
Sbjct:  197 AVAIHLASENSHRISAIMVENTFLSIPHMASTLFSFFPM----------RYLPLWCYKNKFLSYRKISQCRMPSLFISGLSDQLIPPVMMKQLYELSPSRTK--RLAIFPDGTHNDTWQCQG--YFTALEQFIKEVVKSHSPEEMAKTSSN 333          
BLAST of CV712668 vs. ExPASy Swiss-Prot
Match: ABHDD_MOUSE (Abhydrolase domain-containing protein 13 OS=Mus musculus GN=Abhd13 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 45/151 (29.80%), Postives = 78/151 (51.66%), Query Frame = -2
Query:  329 AVGAVLTKNNPDKVAALILENTFTSILDMAGVLLPFLKWFIGGSGSKGPRILN-FLVRSPWSTIDVVGEIKQPILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVEFPTGMHMDTWLAGGDQYWRSIQEFLAEHVRK---KKESETSGN 769
            AV   L   N  +++A+++ENTF SI  MA  L  F             R L  +  ++ + +   + + + P LF+SGL D+++PP  M+ LY  + +R K  +   FP G H DTW   G  Y+ ++++F+ E ++    +  ++TS N
Sbjct:  197 AVAIHLASENSHRISAIMVENTFLSIPHMASTLFSFFPM----------RYLPLWCYKNKFLSYRKISQCRMPSLFISGLSDQLIPPVMMKQLYELSPSRTK--RLAIFPDGTHNDTWQCQG--YFTALEQFIKEVIKSHSPEDMTKTSSN 333          
BLAST of CV712668 vs. ExPASy Swiss-Prot
Match: ABHDD_XENLA (Abhydrolase domain-containing protein 13 OS=Xenopus laevis GN=abhd13 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 44/135 (32.59%), Postives = 69/135 (51.11%), Query Frame = -2
Query:  368 AVGAVLTKNNPDKVAALILENTFTSILDMAGVLLPFLKWFIGGSGSKGPRILN-FLVRSPWSTIDVVGEIKQPILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVEFPTGMHMDTWLAGGDQYWRSIQEFLAE 769
            AV   L   N  ++ AL+LENTF SI  MA  L   L            R L  +  ++ + +   + + + P LF+SGL D+++PP  M+ LY  + +R K  +   FP G H DTW   G  Y+ ++++F+ E
Sbjct:  197 AVAIHLASENAHRICALVLENTFLSIPHMASTLFSVLPM----------RYLPLWCYKNKFLSYRKIVQCRMPSLFISGLSDQLIPPFMMKQLYELSPSRTK--RLAIFPDGTHNDTWQCQG--YFTALEQFIKE 317          
The following BLAST results are available for this feature:
BLAST of CV712668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
BEM46_SCHPO4.928e-1843.38Protein bem46 OS=Schizosaccharomyces pombe GN=bem4... [more]
YN60_YEAST2.798e-1339.20Uncharacterized membrane protein YNL320W OS=Saccha... [more]
ABHDD_DANRE1.389e-1232.88Abhydrolase domain-containing protein 13 OS=Danio ... [more]
ABHDD_CHICK2.369e-1231.13Abhydrolase domain-containing protein 13 OS=Gallus... [more]
ABHDD_HUMAN5.278e-1231.13Abhydrolase domain-containing protein 13 OS=Homo s... [more]
ABHDD_MOUSE1.536e-1129.80Abhydrolase domain-containing protein 13 OS=Mus mu... [more]
ABHDD_XENLA3.421e-1132.59Abhydrolase domain-containing protein 13 OS=Xenopu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L17_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712668 ID=CV712668; Name=CV712668; organism=Citrus sinensis; type=EST; length=770bp
GCTTTAGACTTCTTATTTCATACAACGAATATGTCAGAATTCATTAGGTA
CTTAACGAATGTGATCAAAGTCATACAGTGTACCCAAGGGCATTCAAATT
GTTTTGGTGTCTACTGAAGTCTGTCAATCTAACAATAACTCTTCCAAGAG
AAAATCTGAATGGATTCATCAGGTCTCAGCTGGCAGCAACTCCTCATTGT
AAGCTCATAACTGATGCAACCTCAGAAATGAAAAAGGCAGAAATTGTTTG
AGATCCTTGTGTGAGACAATCAATAAAACCCAATAGTTTGCATGTCAACA
CCAGTCACCTCCCCTCGGAATCATTGTCATTGCCTGACGTTTCACTTTCC
TTTTTCTTTCTAACATGTTCTGCCAGGAACTCCTGAATTGATCTCCAATA
CTGATCACCACCAGCCAACCAAGTATCCATATGCATGCCAGTAGGAAATT
CCACAAATTTGCAATGCTTGTTACGAGCAGCTGCTTTAGCATACAGCATT
TGCATGTGTGATGGAGGAACCATCTCATCTTGCAACCCAGAGAGAAAAAG
GATTGGCTGCTTAATCTCACCAACAACATCAATTGTACTCCAAGGAGAGC
GTACAAGAAAATTAAGAATTCTTGGACCTTTTGAACCACTGCCCCCAATA
AACCACTTCAGGAATGGCAGAAGAACTCCAGCCATGTCCAGTATTGATGT
GAAAGTATTCTCCAGTATCAGTGCAGCGACCTTATCCGGATTATTCTTAG
TAAGCACAGCTCCAACGGCA
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