CV712666

Overview
NameCV712666
Unique NameCV712666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9289 contig Csv1_Contig9289:95..853. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.519e-64
Identity = 142/209 (67.94%), Postives = 158/209 (75.60%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGVQMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPGLMAADVNAMVSIPSSKSPFTTTSD---SKGAGGKSKITCAKDVFFSAFSSPMASGETASLS------YPRMAVAGAKPTFFAPR 757
            RALRQFTL  GKSAGRNSSGRIT+FHRGGGSKRL RRIDLKR+TSS+GIVE +EYDPNRSS IAPVRWI+G    QKK NTIE+F PP  RK  EPTT  ISG FSFSFL   VD+RKVA FSPGLMAA V  +V +P+   P +++     SKGAG  S  T  KDVFFSAFSSP A  ETASL+      +PR+AVAGAKP FFAPR
Sbjct:    7 RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRSSQIAPVRWIKG--GCQKKMNTIEKFAPP--RKILEPTTNTISGLFSFSFLPGKVDKRKVACFSPGLMAAYV--VVGLPTGMPPLSSSKSAFASKGAG--STKTLVKDVFFSAFSSPKAKRETASLAFASSFGFPRIAVAGAKPAFFAPR 207          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.212e-37
Identity = 89/126 (70.63%), Postives = 97/126 (76.98%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGV-QMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPG 532
            RALR FTL  GKSAGRNSSGRIT+FHRGGGSKRLQR+IDLKR+TSSIGIVER+EYDPNRSS IA VRWIEGV   +Q+K  TIEEF  P  RK  E TTA I   FSFS LS  + Q + AS S G
Sbjct:    8 RALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALP--RKILESTTATIFCLFSFSSLSSPLAQGETASLSFG 131          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.212e-37
Identity = 89/126 (70.63%), Postives = 97/126 (76.98%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGV-QMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPG 532
            RALR FTL  GKSAGRNSSGRIT+FHRGGGSKRLQR+IDLKR+TSSIGIVER+EYDPNRSS IA VRWIEGV   +Q+K  TIEEF  P  RK  E TTA I   FSFS LS  + Q + AS S G
Sbjct:    8 RALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALP--RKILESTTATIFCLFSFSSLSSPLAQGETASLSFG 131          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.212e-37
Identity = 89/126 (70.63%), Postives = 97/126 (76.98%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGV-QMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPG 532
            RALR FTL  GKSAGRNSSGRIT+FHRGGGSKRLQR+IDLKR+TSSIGIVER+EYDPNRSS IA VRWIEGV   +Q+K  TIEEF  P  RK  E TTA I   FSFS LS  + Q + AS S G
Sbjct:    8 RALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALP--RKILESTTATIFCLFSFSSLSSPLAQGETASLSFG 131          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.137e-27
Identity = 88/204 (43.14%), Postives = 107/204 (52.45%), Query Frame = 2
Query:  158 RALRQFTLG-KGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGVQMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFL---SQNVDQRKVASFSPGLMAADVNAMVSIPSSKSPFTTTSDSKGAGGKSKITCAKDVFFSAFSSPMASGETASLSYPRMAVAGAKPTFFAPR 757
            +AL+Q T   K  SAGRNSSGRIT+FHRGGGSKRLQR+ID KR+TSS+GIVER+EYDPNRSSWIA VRWIEGV    K+    +         FF          FSFS L   +Q +   K  +  P     + + ++           T D +          AK+V      S         L  P +AVAGAKP FFA R
Sbjct:    9 KALKQLTFHLKRNSAGRNSSGRITVFHRGGGSKRLQRKIDFKRSTSSMGIVERIEYDPNRSSWIALVRWIEGVLRPGKRLAFSKANSRREKNMFF------FGLLFSFSSLPRQAQRIKYEKTRALRPCEQILESSWVLG----------TRDLR----------AKEVSLGPLGS--------FLGLPSIAVAGAKPAFFAFR 178          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RICM5 (50S ribosomal protein L2 OS=Rickettsia massiliae (strain Mtu5) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RICFE (50S ribosomal protein L2 OS=Rickettsia felis GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RICCN (50S ribosomal protein L2 OS=Rickettsia conorii GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RICAE (50S ribosomal protein L2 OS=Rickettsia africae (strain ESF-5) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of CV712666 vs. ExPASy Swiss-Prot
Match: RL2_RICTY (50S ribosomal protein L2 OS=Rickettsia typhi GN=rplB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  158 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 370
            R L+  T G  K+ GRN  GRIT +HRGGG K+L R ID KR    I  +VER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGMSKTGGRNQQGRITSWHRGGGHKKLYRVIDFKRKKIDIFAVVERIEYDPNRTAFIALIKYDDG 99          
The following BLAST results are available for this feature:
BLAST of CV712666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RM02_ARATH1.519e-6467.9460S ribosomal protein L2, mitochondrial OS=Arabido... [more]
RM02_ORYSJ1.212e-3770.6360S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI1.212e-3770.6360S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA1.212e-3770.6360S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_MARPO1.137e-2743.1460S ribosomal protein L2, mitochondrial OS=Marchan... [more]
RL2_RICM51.594e-1352.7850S ribosomal protein L2 OS=Rickettsia massiliae (... [more]
RL2_RICFE1.594e-1352.7850S ribosomal protein L2 OS=Rickettsia felis GN=rp... [more]
RL2_RICCN1.594e-1352.7850S ribosomal protein L2 OS=Rickettsia conorii GN=... [more]
RL2_RICAE1.594e-1352.7850S ribosomal protein L2 OS=Rickettsia africae (st... [more]
RL2_RICTY2.082e-1351.3950S ribosomal protein L2 OS=Rickettsia typhi GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712666 ID=CV712666; Name=CV712666; organism=Citrus sinensis; type=EST; length=759bp
GCTGCAGGAATTCTGGCACGAGGGATCTTTTTACAAGGGGCTTTTGCTTG
TATTAAAGTTTTTTTTTTTTTTTAATGTGTATGTTATAGGAGTAGGGGCT
AATTTGTAAGGGAATCGAATGGGTACGAAACAGGCAATGACAAAATTTAA
AGAGGTGAGAGCACTGAGACAATTCACTTTGGGTAAAGGGAAGTCCGCTG
GTAGGAACTCCTCGGGGCGTATTACGATTTTTCACCGGGGGGGTGGTTCG
AAGCGATTGCAGCGAAGAATTGATCTGAAACGTACCACTTCCTCTATTGG
TATTGTTGAAAGGGTTGAATATGACCCTAATCGTTCCTCTTGGATCGCTC
CTGTACGATGGATCGAAGGGGTTCAGATGCAGCAGAAGAAGTGCAACACC
ATAGAAGAGTTTGATCCGCCGCCGCTACGTAAGTTCTTCGAACCTACCAC
CGCCGCCATCAGCGGCAAATTTTCGTTCTCTTTCCTCTCCCAGAATGTGG
ATCAAAGAAAGGTAGCTTCCTTCTCACCTGGACTGATGGCGGCTGATGTA
AATGCCATGGTTAGCATTCCTAGTTCGAAGAGCCCCTTTACGACTACTAG
TGATAGCAAGGGTGCAGGAGGAAAAAGTAAAATAACTTGCGCAAAGGATG
TCTTCTTTTCTGCATTCTCATCTCCAATGGCCAGTGGAGAGACTGCCTCC
CTTTCCTACCCTAGGATGGCAGTAGCTGGAGCGAAGCCCACTTTCTTCGC
CCCTCGAAT
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