CV712665

Overview
NameCV712665
Unique NameCV712665
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712665 vs. ExPASy Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.663e-45
Identity = 106/174 (60.92%), Postives = 118/174 (67.82%), Query Frame = -1
Query:  317 ASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR-SLPAKP----------------KDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QN 760
            A  ETASL++      PR+AVAGAKP FFAPRM +KV         RGK+T SLCE+QK R  S  WAHRIK KA LSWQ FRRQDTLG+VGAA H KSKPKTD+ +LPAKP                KDGAC+V   PVTYIIASHQLEAGKMV+N D SKPST + L S QN
Sbjct:  176 AKRETASLAFASSFGFPRIAVAGAKPAFFAPRMRQKV---------RGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPVTYIIASHQLEAGKMVMNCDWSKPSTSSFLQSAQN 340          
BLAST of CV712665 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.141e-41
Identity = 109/234 (46.58%), Postives = 125/234 (53.42%), Query Frame = -1
Query:  248 MASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 763
            +A GETASLS+      PR+AVAGAKP FFA RM EK         + GK T SLCEI+KWR     WAHRIK KAALSWQ  R+Q TL +VGAAEHN+SK K D+                                        SLPAK      PKDGA +V   PVTYI+ASHQLEAG MV+N D SKPS    L   QNA+ +  F +   T   GRV+G    A SWP
Sbjct:  120 LAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344          

HSP 2 Score: 28.4906 bits (62), Expect = 5.141e-41
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -2
Query:  181 SYRYETLGLNSIIGNCIPL 237
            +YR+E L LNS +GN IPL
Sbjct:  348 AYRHEILDLNSKVGNSIPL 366          
BLAST of CV712665 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.141e-41
Identity = 109/234 (46.58%), Postives = 125/234 (53.42%), Query Frame = -1
Query:  248 MASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 763
            +A GETASLS+      PR+AVAGAKP FFA RM EK         + GK T SLCEI+KWR     WAHRIK KAALSWQ  R+Q TL +VGAAEHN+SK K D+                                        SLPAK      PKDGA +V   PVTYI+ASHQLEAG MV+N D SKPS    L   QNA+ +  F +   T   GRV+G    A SWP
Sbjct:  120 LAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344          

HSP 2 Score: 28.4906 bits (62), Expect = 5.141e-41
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -2
Query:  181 SYRYETLGLNSIIGNCIPL 237
            +YR+E L LNS +GN IPL
Sbjct:  348 AYRHEILDLNSKVGNSIPL 366          
BLAST of CV712665 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.141e-41
Identity = 109/234 (46.58%), Postives = 125/234 (53.42%), Query Frame = -1
Query:  248 MASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 763
            +A GETASLS+      PR+AVAGAKP FFA RM EK         + GK T SLCEI+KWR     WAHRIK KAALSWQ  R+Q TL +VGAAEHN+SK K D+                                        SLPAK      PKDGA +V   PVTYI+ASHQLEAG MV+N D SKPS    L   QNA+ +  F +   T   GRV+G    A SWP
Sbjct:  120 LAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344          

HSP 2 Score: 28.4906 bits (62), Expect = 5.141e-41
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -2
Query:  181 SYRYETLGLNSIIGNCIPL 237
            +YR+E L LNS +GN IPL
Sbjct:  348 AYRHEILDLNSKVGNSIPL 366          
BLAST of CV712665 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.276e-11
Identity = 58/152 (38.16%), Postives = 77/152 (50.66%), Query Frame = -1
Query:  344 LSYPRMAVAGAKPTFFAPRMV--EKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSW-QGFRRQDTLGIVGAAEHNKSKPKTD------------RSLPAKPKDGACRV-----PVTYIIASHQLEAGKMVVNYDGSKPST 739
            L  P +AVAGAKP FFA RM     + G +     RG+NT S  E Q+W+  S   A R K    LSW QG + ++ L ++ A +  K   + +            R+L A    G+ RV     P TYI+AS  LE G  V+N+ GSKPST
Sbjct:  160 LGLPSIAVAGAKPAFFAFRMKGPSSLTGRERLSPLRGENTFSQSEGQRWKTQSG--APRRK-SLVLSWSQGPKARNGL-MISAHDIGKKDRRPEMAGPHTIPEHAPRALHAVGPSGSGRVLRTSEPFTYILASENLEVGNTVMNFHGSKPST 307          

HSP 2 Score: 20.4014 bits (41), Expect = 1.276e-11
Identity = 8/30 (26.67%), Postives = 13/30 (43.33%), Query Frame = -2
Query:  181 WMGHSAGLTAFSYRYETLGLNSIIGNCIPL 270
            W+       +   +Y       ++GNCIPL
Sbjct:  336 WLHPRGDYASSENKYILDSYYQMVGNCIPL 365          
The following BLAST results are available for this feature:
BLAST of CV712665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RM02_ARATH4.663e-4560.9260S ribosomal protein L2, mitochondrial OS=Arabido... [more]
RM02_ORYSJ5.141e-4146.5860S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI5.141e-4146.5860S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA5.141e-4146.5860S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_MARPO1.276e-1138.1660S ribosomal protein L2, mitochondrial OS=Marchan... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L16_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712665 ID=CV712665; Name=CV712665; organism=Citrus sinensis; type=EST; length=763bp
GGAAAAACAACTTAATTATTTGATGGAATTGAAGAAAAACTAAGTACATT
AAGAAATTTGAAAGAAAGAATAGAAGGGATACTGATAGAAGAATAAGTAT
TCCTTTTCTTTCCGTCTTATCAGAGGGAAGGGGTCCTCTTCATTGAAAAA
GGGGAAAGGAGTTACGCAAATGTGAGGGTCTAATGGTATGCAGTTTCCAA
TTATAGAATTTAGACCAAGTGTCTCATACCTATAACTAAAAGCAGTCAGG
CCAGCTGAATGCCCCATCCACTCGGCCGTTCTTTGCTGTCTGAATAAAGT
CTTAGTGTAGATAGGCATTCTGTCAAGATGGCAATAAGTTACCGGTTGAA
GGTTTGGACCCATCATAATTCACCACCATTTTGCCTGCTTCCAATTGATG
ACTGGCTATTATATAAGTGACAGGTACTCTGCATGCTCCATCCTTGGGCT
TGGCAGGCAAGCTGCGATCTGTCTTTGGCTTTGATTTGTTATGCTCAGCA
GCTCCAACAATCCCTAAAGTATCTTGCCGCCTAAAACCCTGCCAAGAAAG
TGCTGCCTTAGGTTTGATCCGATGTGCCCAGAAACTGCTATCTGCTCTCC
ACTTTTGGATCTCACAAAGGGATAATGTGTTTTTCCCTCTTTGGTCAGGT
GAGCTATCACTTCCTCCGACTTTCTCTACCATTCGAGGGGCGAAGAAAGT
GGGCTTCGCTCCAGCTACTGCCATCCTAGGGTAGGAAAGGGAGGCAGTCT
CTCCACTGGCCAT
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