CV712665
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712665 vs. ExPASy Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 4.663e-45 Identity = 106/174 (60.92%), Postives = 118/174 (67.82%), Query Frame = -1 Query: 317 ASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR-SLPAKP----------------KDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QN 760 A ETASL++ PR+AVAGAKP FFAPRM +KV RGK+T SLCE+QK R S WAHRIK KA LSWQ FRRQDTLG+VGAA H KSKPKTD+ +LPAKP KDGAC+V PVTYIIASHQLEAGKMV+N D SKPST + L S QN Sbjct: 176 AKRETASLAFASSFGFPRIAVAGAKPAFFAPRMRQKV---------RGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPVTYIIASHQLEAGKMVMNCDWSKPSTSSFLQSAQN 340
BLAST of CV712665 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2) HSP 1 Score: 160.999 bits (406), Expect = 5.141e-41 Identity = 109/234 (46.58%), Postives = 125/234 (53.42%), Query Frame = -1 Query: 248 MASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 763 +A GETASLS+ PR+AVAGAKP FFA RM EK + GK T SLCEI+KWR WAHRIK KAALSWQ R+Q TL +VGAAEHN+SK K D+ SLPAK PKDGA +V PVTYI+ASHQLEAG MV+N D SKPS L QNA+ + F + T GRV+G A SWP Sbjct: 120 LAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344 HSP 2 Score: 28.4906 bits (62), Expect = 5.141e-41 Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -2 Query: 181 SYRYETLGLNSIIGNCIPL 237 +YR+E L LNS +GN IPL Sbjct: 348 AYRHEILDLNSKVGNSIPL 366
BLAST of CV712665 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2) HSP 1 Score: 160.999 bits (406), Expect = 5.141e-41 Identity = 109/234 (46.58%), Postives = 125/234 (53.42%), Query Frame = -1 Query: 248 MASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 763 +A GETASLS+ PR+AVAGAKP FFA RM EK + GK T SLCEI+KWR WAHRIK KAALSWQ R+Q TL +VGAAEHN+SK K D+ SLPAK PKDGA +V PVTYI+ASHQLEAG MV+N D SKPS L QNA+ + F + T GRV+G A SWP Sbjct: 120 LAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344 HSP 2 Score: 28.4906 bits (62), Expect = 5.141e-41 Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -2 Query: 181 SYRYETLGLNSIIGNCIPL 237 +YR+E L LNS +GN IPL Sbjct: 348 AYRHEILDLNSKVGNSIPL 366
BLAST of CV712665 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 5.141e-41 Identity = 109/234 (46.58%), Postives = 125/234 (53.42%), Query Frame = -1 Query: 248 MASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 763 +A GETASLS+ PR+AVAGAKP FFA RM EK + GK T SLCEI+KWR WAHRIK KAALSWQ R+Q TL +VGAAEHN+SK K D+ SLPAK PKDGA +V PVTYI+ASHQLEAG MV+N D SKPS L QNA+ + F + T GRV+G A SWP Sbjct: 120 LAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344 HSP 2 Score: 28.4906 bits (62), Expect = 5.141e-41 Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -2 Query: 181 SYRYETLGLNSIIGNCIPL 237 +YR+E L LNS +GN IPL Sbjct: 348 AYRHEILDLNSKVGNSIPL 366
BLAST of CV712665 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.276e-11 Identity = 58/152 (38.16%), Postives = 77/152 (50.66%), Query Frame = -1 Query: 344 LSYPRMAVAGAKPTFFAPRMV--EKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSW-QGFRRQDTLGIVGAAEHNKSKPKTD------------RSLPAKPKDGACRV-----PVTYIIASHQLEAGKMVVNYDGSKPST 739 L P +AVAGAKP FFA RM + G + RG+NT S E Q+W+ S A R K LSW QG + ++ L ++ A + K + + R+L A G+ RV P TYI+AS LE G V+N+ GSKPST Sbjct: 160 LGLPSIAVAGAKPAFFAFRMKGPSSLTGRERLSPLRGENTFSQSEGQRWKTQSG--APRRK-SLVLSWSQGPKARNGL-MISAHDIGKKDRRPEMAGPHTIPEHAPRALHAVGPSGSGRVLRTSEPFTYILASENLEVGNTVMNFHGSKPST 307 HSP 2 Score: 20.4014 bits (41), Expect = 1.276e-11 Identity = 8/30 (26.67%), Postives = 13/30 (43.33%), Query Frame = -2 Query: 181 WMGHSAGLTAFSYRYETLGLNSIIGNCIPL 270 W+ + +Y ++GNCIPL Sbjct: 336 WLHPRGDYASSENKYILDSYYQMVGNCIPL 365 The following BLAST results are available for this feature:
BLAST of CV712665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV712665 ID=CV712665; Name=CV712665; organism=Citrus sinensis; type=EST; length=763bpback to top |