EY660021

Overview
NameEY660021
Unique NameEY660021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660021_ssr515 microsatellite EY660021_ssr515:515..524. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 2.409e-43
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.409e-43
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 2.409e-43
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.409e-43
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.409e-43
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 2.409e-43
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.409e-43
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.409e-43
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 2.409e-43
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660021 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 2.409e-43
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 2 
Query:   80 GGVKKPHRYRFAPVNLREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 358
            GGVKKPHRYR   V LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   34 GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of EY660021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H33_VITVI2.409e-4395.70Histone H3.3 OS=Vitis vinifera PE=2 SV=3[more]
H33_TOBAC2.409e-4395.70Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1[more]
H33_PINPS2.409e-4395.70Histone H3.3 OS=Pinus pinaster PE=2 SV=3[more]
H33_ORYSJ2.409e-4395.70Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3... [more]
H33_ORYSI2.409e-4395.70Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H33_ORYCO2.409e-4395.70Histone H3.3 OS=Oryza coarctata PE=2 SV=3[more]
H33_MEDSA2.409e-4395.70Histone H3.3 OS=Medicago sativa PE=1 SV=2[more]
H33_LOLTE2.409e-4395.70Histone H3.3 OS=Lolium temulentum PE=2 SV=2[more]
H33_LOLMU2.409e-4395.70Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=... [more]
H33_GOSHI2.409e-4395.70Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660021 ID=EY660021; Name=EY660021; organism=Citrus sinensis; type=EST; length=560bp
GTGGACGCCTGCGGTCCGGTCCGGAATTCGTCCTCACGCGCGCGTCCGAN
AAGGNCTTTCATNAAGAGGGGNNAGNANNGGTGGTGTTAAGAAGCCTCAT
CGTTACCGTTTTGCACCTGTCAACCTTCGAGAAATTCGCAAGTACCAGAA
GAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAGAGACTTGTTCGTG
AAATTGCTCAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATGCAGTG
CTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTTCGAGGA
CACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGCCCAAGG
ACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCGTAATTG
CTGGTTGCTTCAATTTGAATGACTGGAAGGGAAGGGGGCAGTTGTAATGT
GTTAATTTGTACGTGGGGGATTGGTGGGGGGGTAGAATACGTGTCTANCT
CTTGTTAATTAGCAATATATATATAAATGCAAGCCTGTGTCTGAAAAAGA
AGAAGAAAAA
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