CV712180

Overview
NameCV712180
Unique NameCV712180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712180_ssr738 microsatellite CV712180_ssr738:738..747. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2912 contig Csv1_Contig2912:21..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.277e-52
Identity = 105/172 (61.05%), Postives = 129/172 (75.00%), Query Frame = -1
Query:  270 PISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSLVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 785
            PIS    P+      SG  + ++H S    F G S+   R + + + R+      + MA +P IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDITGFYMID+EG LQSVDVSAKFVNG+P+ IEAKY+MR+PREWDRFMRFMERY+  NGLQFVKK
Sbjct:   13 PISARAQPRRCPAGSSGGPSQSLHSS----FGGVSLQCRRTKPASLHRSRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQANGLQFVKK 180          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.668e-52
Identity = 108/169 (63.91%), Postives = 129/169 (76.33%), Query Frame = -1
Query:  270 HPQSRSPSLSGIV--TWAVHGSAQSPFNGQSVHMPRMRLSLVTRNSKVSG-PITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 767
            H Q   P  SGIV  + +V     S F G  V +PR + S  T    +    ITM VKP +QFIQGTDE+T+PDVKLT+SRDGSNGMA+FSF +PSVFDSSGE+G+ITG YMIDEEG +QS DV+A+FVNG+P  I AK+IMRSP+EWDRFMRFMERY++QNGLQFVKK
Sbjct:   15 HSQRNVPR-SGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQFVKK 182          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_OSTTA (Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus tauri GN=psb28 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.590e-33
Identity = 65/126 (51.59%), Postives = 95/126 (75.40%), Query Frame = -1
Query:  270 TRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 647
            +++++ S  +      +IQF++G +E  VP+V+LT+S+DGSNG A F FS+P VF++    GDITG ++ DEEG + +VDV+AKFVNG+P+ IEA+Y+M++  +W+RFMRFMERYA  NGL F KK
Sbjct:   24 SKSARRSVVVRAGTTTSIQFVKGQNETAVPEVRLTRSKDGSNGTAFFIFSDPDVFENGQ--GDITGMFLTDEEGEMSTVDVNAKFVNGKPTGIEARYVMKTEADWNRFMRFMERYAEDNGLGFSKK 147          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.468e-32
Identity = 65/109 (59.63%), Postives = 84/109 (77.06%), Query Frame = -1
Query:  273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596
            IQFI+G DE  +PDV+LT+SRDGS G A F F  P++ D S+ + G+ITG Y+ID+EGTL++ DV+A+F+NG+P  IE+ YIM+SP  WDRFMRFMERY   NGL F K
Sbjct:    5 IQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PORYE (Photosystem II reaction center psb28 protein OS=Porphyra yezoensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.243e-31
Identity = 64/110 (58.18%), Postives = 84/110 (76.36%), Query Frame = -1
Query:  273 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 599
            TIQFIQG +E  VPDV+LT+SRDGS G A F F+ P + D+S  + G+ITG Y++D EG + + DV+AKF+NG+P  IEA ++++SP +WDRFMRFMERYA  NGL F K
Sbjct:    3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQIITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFMERYAQDNGLTFTK 112          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PORPU (Photosystem II reaction center psb28 protein OS=Porphyra purpurea GN=psb28 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.243e-31
Identity = 64/110 (58.18%), Postives = 84/110 (76.36%), Query Frame = -1
Query:  273 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 599
            TIQFIQG +E  VPDV+LT+SRDGS G A F F+ P + D+S  + G+ITG Y++D EG + + DV+AKF+NG+P  IEA ++++SP +WDRFMRFMERYA  NGL F K
Sbjct:    3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQIITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFMERYAQDNGLTFTK 112          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_GUITH (Photosystem II reaction center psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.243e-31
Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = -1
Query:  273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596
            IQFIQG +E  +PDV+LT+SRDGS G A F F+ P V ++   + G+ITG Y+IDEEG L + DV+A+FVNG+P  IEA YIM+S  +WDRFMRFMERY+  NGL F K
Sbjct:    4 IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQLVTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PHATR (Photosystem II reaction center psb28 protein OS=Phaeodactylum tricornutum GN=psb28 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.120e-31
Identity = 64/109 (58.72%), Postives = 83/109 (76.15%), Query Frame = -1
Query:  273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596
            IQFI+G DE  +PDV+LT+S+DGS G A F F  P++ D ++ + G+ITG Y+IDEEG L++ DV+A+FVNG+P  IE+ YIM+SP  WDRFMRFMERY   NGL F K
Sbjct:    5 IQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_THAPS (Photosystem II reaction center psb28 protein OS=Thalassiosira pseudonana GN=psb28 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.723e-31
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = -1
Query:  273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596
            IQFI+G DE  +PDV+LT+SRDGS G A F F   ++ + S  + G+ITG YMIDEEG L++ DVSA+FVNG+P  +E+ YIM+SP  WDRFMRFMERY   NGL F K
Sbjct:    5 IQFIKGIDEKVLPDVRLTRSRDGSTGTATFLFKNANLINKSLALNGEITGMYMIDEEGILETRDVSARFVNGKPQAVESIYIMKSPEAWDRFMRFMERYGESNGLAFTK 113          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_GRATL (Photosystem II reaction center psb28 protein OS=Gracilaria tenuistipitata var. liui GN=psb28 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.168e-31
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = -1
Query:  273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596
            IQFI+G +E  V DV LT+SRDGS G A F F+ P +  S  E  GDITG Y+ D+EG L + DVSAKF+NG+P  +EA YI++SP+EWDRFMRFME+YAN+N L F K
Sbjct:    4 IQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILKSGMEDKGDITGMYLKDDEGELMTRDVSAKFINGKPQAVEAIYIIKSPQEWDRFMRFMEKYANENKLSFTK 112          
The following BLAST results are available for this feature:
BLAST of CV712180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PSB28_ORYSJ1.277e-5261.05Photosystem II reaction center PSB28 protein, chlo... [more]
PSB28_ARATH1.668e-5263.91Photosystem II reaction center PSB28 protein, chlo... [more]
PSB28_OSTTA6.590e-3351.59Photosystem II reaction center psb28 protein, chlo... [more]
PSB28_ODOSI1.468e-3259.63Photosystem II reaction center psb28 protein OS=Od... [more]
PSB28_PORYE1.243e-3158.18Photosystem II reaction center psb28 protein OS=Po... [more]
PSB28_PORPU1.243e-3158.18Photosystem II reaction center psb28 protein OS=Po... [more]
PSB28_GUITH1.243e-3159.63Photosystem II reaction center psb28 protein OS=Gu... [more]
PSB28_PHATR2.120e-3158.72Photosystem II reaction center psb28 protein OS=Ph... [more]
PSB28_THAPS4.723e-3159.63Photosystem II reaction center psb28 protein OS=Th... [more]
PSB28_GRATL6.168e-3159.63Photosystem II reaction center psb28 protein OS=Gr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001A14_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712180 ID=CV712180; Name=CV712180; organism=Citrus sinensis; type=EST; length=872bp
CCCTTTTTTTTTTGGGAAAAACAGATGATTAATTCATTAAGAGAAGTTCA
AGAACACGGACCATCACCTTGCATGTACATAATGAAGGGAAGAAAATCGA
ACATCAGTAGCAGCAGCAAAAATATGTTGAAGAGAAGAGAGCATAAAGGT
TTTTGCATCAAACTTAAATGGCTGTCAAGCAAAGCCTTCACCATTTGCCT
GACCAAATTACACAAAACCAAAGATTTAATAGGGTAAAGCAAAGCAAGGA
GAAGAAAAAAAATGCCTCATTTCTTGACAAATTGCAAGCCATTCTGATTA
GCATACCGCTCCATGAACCTCATGAACCTATCCCACTCTCGGGGAGACCG
CATGATATACTTTGCTTCAATCCTAGAAGGTCTCCCATTGACAAATTTGG
CACTTACATCAACTGATTGAAGAGTTCCCTCCTCATCAATCATGTAAAAT
CCGGTGATATCACCAATTTCACCGGACGAGTCAAAAACGGAGGGTTCACT
AAAACTGAATATGGCCATACCGTTTGAACCATCTCTTGATTTTGTTAGCT
TCACATCCGGAACTGTCAATTCATCAGTTCCTTGGATGAACTGAATTGTT
GGTTTCACCGCCATCGTTATGGGTCCAGATACCTTAGAATTTCGTGTTAC
CAGGGACAAACGCATACGAGGCATATGTACAGATTGGCCGTTGAATGGTG
ATTGTGCACTTCCATGCACAGCCCATGTTACAATACCAGAGAGAGAGGGA
GAGCGGGATTGTGGGTGCCAACAGTGTGAGATTGGAGAGGCTAATGCAAG
AGACCGCAGAGCTGCCATTGCACAAAGACACTGAAGCAGAGACGGAGTCG
GAGAAAGAAGGAGGTAGCCAAA
back to top