CV712178

Overview
NameCV712178
Unique NameCV712178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2911 contig Csv1_Contig2911:1..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.352e-26
Identity = 91/257 (35.41%), Postives = 113/257 (43.97%), Query Frame = 1
Query:   61 MATPIEKSALEFIEQHLFGENSPIAGFXXXXXXXXXXXXXXXXXXXXXXXFFNDAVFFD--------YESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEXXXXXXXXXXXXXXXXXXXXXXVPKKAEGHHFTN-----RXXXXXXXXXXXXHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRD 792
            MATP E SAL  I+++L  E SP+                          + ND   FD        +E+KP+IIDLVTP+P         + F+FD++ +I S+ SN S  F+                       P + +   F                    HYRGVR RPWGK+AAEIRDPTRRG RVWLGTF+T            F+LRGSKAILNFPLE  K +  A   R             KRKRD
Sbjct:    1 MATPNEVSALFLIKKYLLDELSPLP------------------TTATTNRWMNDFTSFDQTGFEFSEFETKPEIIDLVTPKP---------EIFDFDVKSEIPSE-SNDSFTFQSNPPRVTVQSNRKPPLKIAP---PNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNPRAEDGR---------GLYNKRKRD 217          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.330e-25
Identity = 91/252 (36.11%), Postives = 109/252 (43.25%), Query Frame = 1
Query:   61 MATPIEKSALEFIEQHLFGENSPIAGFXXXXXXXXXXXXXXXXXXXXXXXFFNDAV----FFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQS---QPSNCS-SEFEXXXXXXXXXXXXXXXXXXXXXXVPKKAEGHHFTNRXXXXXXXXXXXXHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRD 792
            MATP E SAL FIE+HL  E SP+A                           + +     F +   KP+IIDL TP+      E  +  FEFD    +     +PSN + ++FE                      +   AE    T              HYRGVR+RPWGK+AAEIRDP +RG RVWLGTFDT            F+LRGSKAILNFPLE GK                A   E KRKRD
Sbjct:    1 MATPNEVSALWFIEKHLLDEASPVATDPWMKHESSSATESSSDSSSIIFGSSSSSFAPIDFSESVCKPEIIDLDTPRSM----EFLSIPFEFDSEVSVSDFDFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAEN---TKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKW------------KPRADEGEKKRKRD 233          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.710e-21
Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGK 711
            HYRGVRRRPWGKYAAEIRDP ++GVRVWLGTFDT            F+LRGSKAILNFPLEAGK
Sbjct:   71 HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGK 134          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRD 792
            HYRGVRRRPWGK+AAEIRDP ++G R+WLGTF++            F+LRG KA+LNFPL+AGK D            A   +C  +R+ D
Sbjct:  106 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYD------------APVNSCRKRRRTD 184          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.944e-19
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARE 741
            HYRGVRRRPWGK+AAEIRDP ++G R+WLGTF++            F+LRG KA+LNFPL+AGK ++ A   R+
Sbjct:  109 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPANSGRK 182          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.038e-18
Identity = 48/91 (52.75%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRD 792
            HYRGVRRRPWGKYAAEIRDP ++G R+WLGT+DT            FQLRG KAILNFPL+          +  C      G    KRKRD
Sbjct:   87 HYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDV------RVTSETCSGEGVIGL--GKRKRD 169          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.311e-18
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 702
            HYRGVR+RPWGK+AAEIRDP R+G RVWLGTFDT            F+LRGSKAI+NFPLE
Sbjct:  144 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLE 204          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.149e-18
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 702
            HYRGVR+RPWGK+AAEIRDP R+G RVWLGTFDT            ++LRGSKAI+NFPLE
Sbjct:  137 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLE 197          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.957e-17
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAG------------KCDSNAAVARECDSSAEAGACETKRKRD 792
            HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T            F++RGS+A+LNFPL               +  S+++ +    SS+E G  + +RK +
Sbjct:  116 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKRSSSSSSSSSSSTSSSENGKLKRRRKAE 218          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVAR----ECDSSAEAGACETKR 783
            HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T            F++RGS+A+LNFPL     + +    +       SS E GA + +R
Sbjct:  147 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSSSNENGAPKKRR 238          
The following BLAST results are available for this feature:
BLAST of CV712178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
EF103_ARATH1.352e-2635.41Ethylene-responsive transcription factor 6 OS=Arab... [more]
EF102_ARATH3.330e-2536.11Ethylene-responsive transcription factor 5 OS=Arab... [more]
EF105_ARATH1.710e-2175.00Ethylene-responsive transcription factor ERF105 OS... [more]
EF107_ARATH4.657e-1949.45Ethylene-responsive transcription factor ERF107 OS... [more]
EF106_ARATH7.944e-1956.76Ethylene-responsive transcription factor ERF106 OS... [more]
EF104_ARATH1.038e-1852.75Ethylene-responsive transcription factor ERF104 OS... [more]
ERF5_TOBAC2.311e-1868.85Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_NICSY5.149e-1867.21Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF101_ARATH1.957e-1742.72Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH1.657e-1646.74Ethylene-responsive transcription factor 1A OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A12_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712178 ID=CV712178; Name=CV712178; organism=Citrus sinensis; type=EST; length=792bp
AACTCTTCAATATTTTTAAGATTCAAAAACTCTATAAGGGACACAGCTTG
CTTAGTTGCCATGGCTACACCAATTGAAAAATCAGCGCTCGAGTTTATCG
AGCAACATTTGTTCGGCGAAAATTCTCCTATTGCGGGATTTAGTTCGAGT
TTGTCGAGCGACACTTGCTCGCAATCGCAAACGTCCAGCTCTGCATCTTC
AGATCGTAGTTTCTTCAACGATGCCGTTTTCTTCGACTATGAATCCAAAC
CTCAAATCATTGATCTTGTTACACCGCAACCCACTAATACTTGCTCTGAA
TTGACTAACGATTTCTTTGAATTTGACATTAGACCTCAAATCCAATCGCA
ACCGAGCAATTGTAGCTCGGAATTCGAACCCAAGCCTAAAATATCTCCAA
ATTCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAAAATCTCAGTGCCT
AAGAAAGCCGAAGGTCATCATTTCACCAACCGGAAAAGCAAGGCCAAACC
TGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGACGGAGGCCGTGGG
GAAAGTACGCGGCCGAGATCCGAGATCCTACCCGGAGAGGCGTACGTGTC
TGGCTGGGGACATTTGACACGGCCATTGAAGCAGCTAGGGCGTACGACCG
TGCCGCTTTCCAGCTACGCGGCTCGAAAGCGATCCTCAACTTTCCTCTTG
AAGCCGGCAAGTGCGACTCAAACGCTGCGGTGGCTAGAGAGTGTGACTCG
AGCGCCGAGGCTGGCGCGTGTGAAACGAAACGGAAGAGGGAC
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