CV712176

Overview
NameCV712176
Unique NameCV712176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712176 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.793e-30
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 3
Query:  126 IGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYYGDTPWQ 365
            + +VEP +ED  ++KKRVRNPLVP+GALMTAGVLTAGLISFR+GNS LGQ+LMRARVVVQGATV LMVGT YYYGD PW+
Sbjct:    1 MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQGATVALMVGTGYYYGDNPWK 80          
The following BLAST results are available for this feature:
BLAST of CV712176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATL3I_ARATH1.793e-3078.75RING-H2 finger protein ATL3I OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A11_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712176 ID=CV712176; Name=CV712176; organism=Citrus sinensis; type=EST; length=742bp
AGGCCGAAGCCGAACACGTTTCTTCTTCTGCTGCCTCTTCTTCTTCAGCT
CCTCGCGAAATTGAACCATTTTTTCTTCGTTTCACAGAACAACATAACCT
GCGAACAATCAAATAAATGGATAAGATAGGTACTGTGGAGCCCACTCTAG
AAGATTTTTCGGAGAAGAAGAAGCGTGTTCGGAACCCTCTTGTTCCCATC
GGTGCGCTCATGACAGCAGGAGTGCTCACAGCTGGCTTAATTAGTTTCAG
GCAAGGCAATTCTCATCTGGGTCAGCTCTTAATGAGAGCTAGGGTGGTTG
TCCAAGGTGCTACAGTGGGACTTATGGTTGGCACTGCATACTACTATGGC
GATACTCCTTGGCAATCGAAGTAGAATTTGTTTCTTTTCCCATATATCCT
GTATTTCCTATAGTGGCTATATCTATCAGGGAGTTCTATATCCTTATCAG
TCATGTTTGATGTCATCACTGCAACTTTGAGGTAAATTTTTGCATGGTTG
CAGCGAATGAGATTGTACTTGCATACGCAGATTTTTGTGTTTATGCGGAA
TAAGTATAAAAGAATTGAGTGCTATCTATCAATCAATATATTGACAGCGA
AAAACCGAACAAACGATGCCATTAACACGATTATTCGACTTGATGAGAGT
ACTGAAACTGGAGAGCTACTTCCTCCTTGTATTGAAGCTGCTCTCAATTT
GGGTTGTATGCCAAGAAGAACATCGAGGAGCCAGAGAAATAA
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