CV712172

Overview
NameCV712172
Unique NameCV712172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:32..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.845e-63
Identity = 131/214 (61.21%), Postives = 149/214 (69.63%), Query Frame = 1
Query:  118 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYD-ADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMXXXXXXXXXXXXXXXXXXXXNYNIYKPVARSGGINVDVNVVPEP-ETTSSSNDPPTSLS 753
            DRIKGPWSPEEDE L++LV K+GPRNW++ISKSIPGRSGKSCRLRWCNQLSPQVEHR F+ EEDE I RAHA+FGNKWATIARLLNGRTDNA+KNHWNSTLKRK             C GYD   +  S   +P  +KRSVSAGS  PV TGLYM                    +  ++KPV R G +     V+P P ET+SSS+DPPTSLS
Sbjct:    3 DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK-------------CGGYDHRGYDGSEDHRP--VKRSVSAGSP-PVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFKPVPRPGAV-----VLPLPIETSSSSDDPPTSLS 195          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.377e-33
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.377e-33
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.377e-33
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.377e-33
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.798e-33
Identity = 62/102 (60.78%), Postives = 81/102 (79.41%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            IKGPW+ EED+ + +LVQK+GP+ WSLI+K + GR GK CR RW N L+P+V+  ++T EED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK
Sbjct:   86 IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.798e-33
Identity = 62/102 (60.78%), Postives = 81/102 (79.41%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            IKGPW+ EED+ + +LVQK+GP+ WSLI+K + GR GK CR RW N L+P+V+  ++T EED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK
Sbjct:   86 IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.349e-33
Identity = 73/151 (48.34%), Postives = 96/151 (63.58%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC---SSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTT 567
            +KGPW  EED  L +LV K GP+ WS I+  IPGR GK CR RW N LSP+V    +TPEED++II AHA  GNKW  I+++L+GR  NAIKNHWNSTL +K    S  L +     + +  DA+ G+S    P+ L +S S+ ++   TT
Sbjct:  276 VKGPWKDEEDAKLVELVNKCGPKEWSSIAAKIPGRIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHWNSTLLKKIGGDSKSLNKEKDDDDDDDEDAEDGSSPVLSPISLYQSSSSTTTTTTTT 426          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.925e-33
Identity = 69/154 (44.81%), Postives = 98/154 (63.64%), Query Frame = 1
Query:  118 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNG-------YDADFGNSIQQQPLKLKRSVSAGSSVP 558
            D +KGPW+ EEDE + +LV+K+G ++W+LI+K + GR GK CR RW N L+P+V+  ++T EED +I +AH   GN+WA IA+LL GRTDNA+KNHWNST+KRK      E G FL            D+ +  +  Q  + L   V   +++P
Sbjct:   80 DLVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK-----VETGGFLTVKASGQQEEREDSGYQAAEDQNHVLLSEPVERSANIP 228          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.925e-33
Identity = 61/102 (59.80%), Postives = 80/102 (78.43%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            IKGPW+ EED+ + +LVQK+GP+ WSLI+K + GR GK CR RW N L+P+V+  ++T  ED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK
Sbjct:   86 IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
The following BLAST results are available for this feature:
BLAST of CV712172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB44_ARATH2.845e-6361.21Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
MYB_MOUSE1.377e-3360.78Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_HUMAN1.377e-3360.78Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_CHICK1.377e-3360.78Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_BOVIN1.377e-3360.78Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYBA_MOUSE1.798e-3360.78Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYBA_HUMAN1.798e-3360.78Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
MYBQ_DICDI2.349e-3348.34Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]
MYBB_XENLA8.925e-3344.81Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
MYBA_CHICK8.925e-3359.80Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712172 ID=CV712172; Name=CV712172; organism=Citrus sinensis; type=EST; length=754bp
AAAAGAACCACCTCTCTCGAAGCTAAAAACTGAAATTCTCTTGCATGATC
AACACCCATTCATTGAAGTTAAATTATTTTTAATTGTTCATTAATGGCGT
TTAATAGAAGAGAAGTGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAA
GACGAAGCCTTACAGCAGCTGGTTCAAAAACACGGCCCAAGAAATTGGTC
TCTAATCAGCAAATCAATTCCCGGAAGATCGGGAAAGTCTTGCCGGCTAC
GGTGGTGCAACCAGCTGTCACCTCAAGTCGAGCACCGAGCGTTCACGCCC
GAAGAAGACGAGATGATCATACGAGCCCACGCTCGGTTTGGCAACAAGTG
GGCCACCATCGCGCGCCTTCTCAACGGCCGAACCGATAACGCGATTAAGA
ATCACTGGAACTCGACCTTAAAACGTAAGTGCTCTTCGATGTTGACAGAG
AACGGTATTTTTTTGAATTGTAATGGATACGATGCGGATTTTGGGAATAG
TATTCAGCAACAGCCGTTGAAATTGAAAAGATCGGTGAGTGCGGGATCGA
GTGTGCCCGTGACCACGGGACTTTATATGAGCCCCGGTAGTCCATCGGGA
TCCGACGTCAGCGATTCAAGCGTGCCGGGTTTGTCATCGAATTACAATAT
ATACAAACCCGTGGCGAGATCTGGCGGTATCAATGTGGACGTGAATGTGG
TGCCCGAGCCGGAAACGACGTCGTCGTCTAATGACCCTCCTACTTCATTG
AGTC
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