CV712171

Overview
NameCV712171
Unique NameCV712171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:238..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.287e-56
Identity = 133/267 (49.81%), Postives = 159/267 (59.55%), Query Frame = -2
Query:  107 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYD-ADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMXXXXXXXXXXXXXXXXXXXSNYNIYKPVARSGGINVDVNVVPEP-ETTSSSNDPPTSLSLSLPGVD-----XXXXXXXXXXXSTQAVNAKASVPAPVSSDSGSKGLV--------GFSKEFMAVMQEMIKQEVRTYMAALEQ 862
            SKSIPGRSGKSCRLRWCNQLSPQVEHR F+ EEDE I RAHA+FGNKWATIARLLNGRTDNA+KNHWNSTLKRK             C GYD   +  S   +P  +KRSVSAGS  PV TGLYM                    +  ++KPV R G +     V+P P ET+SSS+DPPTSLSLSLPG D                +T + +   +  + +    G +G +        G   EFMAV+QEMIK EVR+YM  +++
Sbjct:   33 SKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK-------------CGGYDHRGYDGSEDHRP--VKRSVSAGSP-PVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFKPVPRPGAV-----VLPLPIETSSSSDDPPTSLSLSLPGADVSEESNRSHESTNINNTTSSRHNHNNTVSFMPFSGGFRGAIEEMGKSFPGNGGEFMAVVQEMIKAEVRSYMTEMQR 278          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.036e-22
Identity = 57/120 (47.50%), Postives = 76/120 (63.33%), Query Frame = -2
Query:  503 IPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC---SSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTT 853
            IPGR GK CR RW N LSP+V    +TPEED++II AHA  GNKW  I+++L+GR  NAIKNHWNSTL +K    S  L +     + +  DA+ G+S    P+ L +S S+ ++   TT
Sbjct:  307 IPGRIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHWNSTLLKKIGGDSKSLNKEKDDDDDDDEDAEDGSSPVLSPISLYQSSSSTTTTTTTT 426          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.553e-21
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = -2
Query:  641 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 862
            +K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:  119 AKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.553e-21
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = -2
Query:  641 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 862
            +K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:  119 AKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.553e-21
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = -2
Query:  641 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 862
            +K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:  119 AKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.553e-21
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = -2
Query:  641 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 862
            +K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:  119 AKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.334e-21
Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = -2
Query:  641 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 862
            +K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNA+KNHWNST++RK
Sbjct:   48 AKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 121          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.354e-21
Identity = 53/124 (42.74%), Postives = 73/124 (58.87%), Query Frame = -2
Query:  512 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNG-------YDADFGNSIQQQPLKLKRSVSAGSSVP 862
            +K + GR GK CR RW N L+P+V+  ++T EED +I +AH   GN+WA IA+LL GRTDNA+KNHWNST+KRK      E G FL            D+ +  +  Q  + L   V   +++P
Sbjct:  110 AKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK-----VETGGFLTVKASGQQEEREDSGYQAAEDQNHVLLSEPVERSANIP 228          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.354e-21
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = -2
Query:  602 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLN 862
            +K + GR GK CR RW N L+P+V+  ++T EED +I  AH   GN+WA IA+LL GRTDNA+KNHWNST+KRK      + G FLN
Sbjct:  110 AKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK-----VDTGGFLN 191          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.687e-21
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = -2
Query:  641 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 862
            +K + GR GK CR RW N L+P+V+  ++T EED  I  AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:  116 AKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 189          
The following BLAST results are available for this feature:
BLAST of CV712171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
MYB44_ARATH9.287e-5649.81Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
MYBQ_DICDI1.036e-2247.50Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]
MYB_MOUSE2.553e-2160.81Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_HUMAN2.553e-2160.81Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_CHICK2.553e-2160.81Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_BOVIN2.553e-2160.81Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYB_AVIMB3.334e-2159.46Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYBB_XENLA4.354e-2142.74Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
MYBB_CHICK4.354e-2155.17Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYB_XENLA5.687e-2160.81Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712171 ID=CV712171; Name=CV712171; organism=Citrus sinensis; type=EST; length=863bp
TTTTTTTTTTTTTTTTTACTCACTAACCAGTCCTTTGCATGGCAACATTC
CTTAAAACCCCATCACCGCCCCCACCACTACCGTTATAACACGCGCCACC
TCTCTGCTGCTCAAGCGCCGCCATGTACGTCCTCACTTCCTGCTTTATCA
TCTCCTGCATCACAGCCATAAACTCTTTACTAAACCCCACTAATCCCTTC
GACCCACTGTCACTACTTACTGGAGCCGGCACCGAAGCTTTTGCGTTCAC
TGCCTGAGTTGACTCACTCACTTTGTTTGAAACTTCTGAGGAGGAATCCA
CACCAGGAAGGGACAGACTCAATGAAGTAGGAGGGTCATTAGACGACGAC
GTCGTTTCCGGCTCGGGCACCACATTCACGTCCACATTGATACCGCCAGA
TCTCGCCACGGGTTTGTATATATTGTAATTCGATGACAAACCCGGCACGC
TTGAATCGCTGACGTCGGATCCCGATGGACTACCGGGGCTCATATAAAGT
CCCGTGGTCACGGGCACACTCGATCCCGCACTCACCGATCTTTTCAATTT
CAACGGCTGTTGCTGAATACTATTCCCAAAATCCGCATCGTATCCATTAC
AATTCAAAAAAATACCGTTCTCTGTCAACATCGAAGAGCACTTACGTTTT
AAGGTCGAGTTCCAGTGATTCTTAATCGCGTTATCGGTTCGGCCGTTGAG
AAGGCGCGCGATGGTGGCCCACTTGTTGCCAAACCGAGCGTGGGCTCGTA
TGATCATCTCGTCTTCTTCGGGCGTGAACGCTCGGTGCTCGACTTGAGGT
GACAGCTGGTTGCACCACCGTAGCCGGCAAGACTTTCCCGATCTTCCGGG
AATTGATTTGCTG
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