CV712170

Overview
NameCV712170
Unique NameCV712170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712170_ssr720 microsatellite CV712170_ssr720:720..731. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12317 contig Csv1_Contig12317:290..1029. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712170 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.175e-106
Identity = 184/246 (74.80%), Postives = 219/246 (89.02%), Query Frame = 2
Query:    2 FYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVE 739
            FYFSINIGAL+SSSL+VWIQ+N GWGLGFGIP +FMG AIASFF GT LYRFQ+PGGSPITR+ QV+VASFRK +++VP D+TLLYETQDK SAI GSRKIEH+D+ + LDKAAV+S+ E KSGD+SN W LCTVTQVEELKILIRMFPIWA+GI+FSAVYAQMST+FV+QG  M+  IGSF +PPA+L +FD  SVI WVP+YD+ IVP+ARKFTG ++GF+E+QRMGIGLF+SVLCM+AAA+VE
Sbjct:  204 FYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVE 449          
BLAST of CV712170 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.972e-81
Identity = 146/248 (58.87%), Postives = 192/248 (77.42%), Query Frame = 2
Query:    2 FYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAE-IKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIG-SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVE 739
            FYFSIN+GALI+++++VWIQ N GWG GFG+P + M  A+  FF G+  YR QRPGGSP+TR+ QV+VA+FRK +++VP D +LL+ET D  S I+GSRK+ H+D L+  DKAAV S ++ IK G+  NPW LC+VTQVEELK +I + P+WATGIVF+ VY+QMST+FV QG  MD  +G +F IP ASLS FD +SV+FW P+YD+ I+P+ARKFT  ERGF++LQRMGIGL +S+  M  A V+E
Sbjct:  186 FYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEV-NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLE 432          
BLAST of CV712170 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 6.494e-81
Identity = 143/247 (57.89%), Postives = 190/247 (76.92%), Query Frame = 2
Query:    2 FYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIG-SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVE 739
            FYF IN+GA+I+SS++VWIQ N GWG G G+P + M  A+  FF+G++ YR Q+PGGSP+TRM QV+VAS RK  +++P D +LLYE QD  S+I GSRK+EH+  L   DKAAV ++++ K    S+ W LCTVTQVEELK LIR+ PIWATGIVF++VY+QM T+FV QG  +D  +G +F IP ASLS FD +SV+FW P+YDK+IVP ARK+TG ERGF++LQR+GIGL +S+  M +A ++E
Sbjct:  186 FYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILE 432          
BLAST of CV712170 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.002e-51
Identity = 100/249 (40.16%), Postives = 163/249 (65.46%), Query Frame = 2
Query:    2 FYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASA---IEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVE 739
            F+F IN+G+L++ +++V++QD+ G   G+GI A  +  A++ F +GT+ YRF++  GSP+T++  V+VA++R   LE+P D + LY+  D  +A   ++G +K+ H+++ R LDKAA+       + +  N W L T+T VEE+K ++RM PIWAT I+F  V+AQ++TL V Q   +D SIGSF IPPAS++ F V  ++    +YD++ + + +K      G   LQR+G+GLF   + M+ AA+VE
Sbjct:  193 FFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVE 441          
BLAST of CV712170 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.560e-50
Identity = 107/245 (43.67%), Postives = 155/245 (63.27%), Query Frame = 2
Query:    8 FSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSI-GSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVE 739
            FSI  G L +++++V++QDN GW LG+G+P L +  +I  F  GT  YR + P GSP T+M +V+VASFRK N  + +D T  +E        +G+  I  +  LR LD+A+      +K+G  ++ W LCT T+VEE K ++RM P+     V S + AQ++TLFV+QG  +D  + GSF+IPPASLS F  +S++  + +YD++ V I RKFTG  RG + LQRMGIGL   +L M  A+V E
Sbjct:  195 FSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLDRAS------LKTGT-NHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMIVASVTE 432          
BLAST of CV712170 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.858e-46
Identity = 98/245 (40.00%), Postives = 150/245 (61.22%), Query Frame = 2
Query:    8 FSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSI-GSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVE 739
            FSI  G   +++++V++QDN GW +G+G+  L + F+I  F  GT LYR + P GSP T+M +V+VAS RK    + +DST  YE      A + +  I  +  LR L++A+      +K+G  ++ W LCT+T+VEE K +++M P+     V S + AQ+ TLF++QG  +D  +  +F+IPPASL  F   S++  + IYD++ V   RK TG  RG + LQRMGIG+ L +L M  A++ E
Sbjct:  195 FSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLNRAS------LKTGS-THKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILHILIMIIASITE 432          
BLAST of CV712170 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.282e-36
Identity = 92/253 (36.36%), Postives = 146/253 (57.71%), Query Frame = 2
Query:    2 FYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVS--DAEIKSGDFS-NPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIG----SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVE 739
            +Y S  +  LI+ + IV+IQ++ GW +GFG+PA+ M  A   F   + LY  +    S  T + Q +VA+++K  L +P+     +++ D    ++ S     S +LR L+KA ++S  + EI S  F+ NPW LCT  +VEELK LI++ PIW+TGI+ S +    S+  + Q   MD  +     SF +P  S   F +I++  WV +YD+ ++P+A K  G+    S   RMG+GLF+S L M+ +A+VE
Sbjct:  189 YYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLPDH----HDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMS-INTSQSSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVE 436          
BLAST of CV712170 vs. ExPASy Swiss-Prot
Match: S15A4_BOVIN (Solute carrier family 15 member 4 OS=Bos taurus GN=SLC15A4 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 69/254 (27.17%), Postives = 119/254 (46.85%), Query Frame = 2
Query:    2 FYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGM------VMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGF--SELQRMGIGLFLSVLCMSAAAVVE 739
            FY+SIN+GA++S   I +IQ N  +  G+ IPA+ +G A   F  G + +  + P GS  T M ++LV S R                ++ + + EG    + S +    D   +      + G F          +VE++K L+++ P++   I +  VY QM T +V Q +      +   +    T P A L+ FD + ++  +P+ DK++ PI      K  G   S L+R+ +G+F  +    AA ++E
Sbjct:  191 FYWSINLGAIVSLGGIAYIQQNVSFVTGYAIPAVCIGVAFVVFLCGQTFFITKPPDGSAFTDMFRILVYSCRPQK-----------RIREHSPSGEGIGVFQQSSKHSLFDSCKM-----SRGGPFPE-------DKVEDVKALVKIVPVFLALIPYWTVYFQMQTTYVLQSLHLKIPEISSITTNPHTFPAAWLTMFDAVLILLLIPLKDKLVDPIL-----KRNGLLPSSLKRIAVGMFFVMCSAFAAGILE 416          
BLAST of CV712170 vs. ExPASy Swiss-Prot
Match: S15A4_HUMAN (Solute carrier family 15 member 4 OS=Homo sapiens GN=SLC15A4 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.143e-19
Identity = 69/254 (27.17%), Postives = 120/254 (47.24%), Query Frame = 2
Query:    2 FYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGM------VMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGF--SELQRMGIGLFLSVLCMSAAAVVE 739
            FY+SIN+GA++S   I +IQ N  +  G+ IP + +G A   F  G S++  + P GS  T M ++L  S                 + ++ S  EG    + S +    D   +        G F       T  +VE++K L+++ P++   I +  VY QM T +V Q +      + + +    T+P A L+ FD + ++  +P+ DK++ PI R+      G   S L+R+ +G+F  +    AA ++E
Sbjct:  198 FYWSINLGAILSLGGIAYIQQNVSFVTGYAIPTVCVGLAFVVFLCGQSVFITKPPDGSAFTDMFKILTYSCCSQK-----------RSGERQSNGEGIGVFQQSSKQSLFDSCKM-----SHGGPF-------TEEKVEDVKALVKIVPVFLALIPYWTVYFQMQTTYVLQSLHLRIPEISNITTTPHTLPAAWLTMFDAVLILLLIPLKDKLVDPILRR-----HGLLPSSLKRIAVGMFFVMCSAFAAGILE 423          
BLAST of CV712170 vs. ExPASy Swiss-Prot
Match: S15A4_XENLA (Solute carrier family 15 member 4 OS=Xenopus laevis GN=slc15a4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.878e-17
Identity = 65/254 (25.59%), Postives = 119/254 (46.85%), Query Frame = 2
Query:    2 FYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKI---EHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGM---VMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGF--SELQRMGIGLFLSVLCMSAAAVVE 739
            FY+SIN+GA+IS   + ++Q N  + +G+ IPA+ +G +   F  G +++  +   GS  T M ++L                  Y    +    E +R I   +H  +   LD A        +              +VE++K L+++ P++   I +  VY QM T +V Q +   +      + T+P A L+ FD + ++  +P+ DK++ P  +K     RG   S L+R+ +G+F  +  + AA ++E
Sbjct:  205 FYWSINLGAIISLGGVAYVQQNVEFLIGYIIPAVCIGVSFLVFLCGKTVFVTKPADGSAFTDMVKILA-----------------YFCCSRKHTRENTRNIQNNQHRHKQSRLDMAKASHGGPFRE------------DKVEDVKALVKIIPVFLALIPYWTVYFQMQTTYVLQSLHLRIPQIFNNNHTLPAAWLTMFDAVLILILIPLKDKLVDPFLKK-----RGLLPSPLKRIAVGMFFVMCSVLAAGILE 424          
The following BLAST results are available for this feature:
BLAST of CV712170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PTR2_ARATH1.175e-10674.80Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR1_ARATH4.972e-8158.87Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH6.494e-8157.89Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
CHL1_ARATH7.002e-5140.16Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PTR3A_ARATH1.560e-5043.67Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR3B_ARATH8.858e-4640.00Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR2X_ARATH1.282e-3636.36Probable peptide transporter At1g52190 OS=Arabidop... [more]
S15A4_BOVIN1.424e-1927.17Solute carrier family 15 member 4 OS=Bos taurus GN... [more]
S15A4_HUMAN4.143e-1927.17Solute carrier family 15 member 4 OS=Homo sapiens ... [more]
S15A4_XENLA3.878e-1725.59Solute carrier family 15 member 4 OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A08_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712170 ID=CV712170; Name=CV712170; organism=Citrus sinensis; type=EST; length=740bp
GTTTTATTTTTCTATCAACATTGGTGCCCTGATATCAAGTAGTCTTATTG
TATGGATCCAAGACAATGCTGGGTGGGGACTAGGATTTGGAATTCCTGCA
TTGTTTATGGGCTTTGCCATTGCAAGTTTCTTTTCAGGAACTTCACTCTA
CAGATTTCAAAGGCCAGGGGGAAGCCCCATTACAAGAATGTGTCAGGTTT
TGGTTGCTTCATTCCGTAAATGGAATTTGGAAGTACCTAATGACAGTACT
CTTCTGTATGAAACTCAAGACAAAGCCTCAGCCATTGAAGGTAGCCGGAA
GATAGAGCACAGCGATGAACTTAGGTGCCTTGACAAAGCTGCTGTAGTTT
CAGATGCTGAGATCAAAAGTGGTGATTTCTCCAATCCTTGGATTCTTTGC
ACTGTAACTCAGGTGGAGGAACTAAAAATTTTGATCCGAATGTTTCCTAT
CTGGGCTACTGGAATTGTCTTTTCTGCTGTATATGCCCAAATGTCTACAT
TGTTTGTGGAACAAGGGATGGTGATGGACACGTCTATTGGTTCTTTCACC
ATTCCTCCTGCCTCTCTCTCAAGTTTTGATGTTATCAGTGTTATTTTCTG
GGTACCTATATATGATAAGATCATTGTCCCAATAGCAAGGAAGTTCACAG
GCAAGGAGAGGGGTTTCTCAGAGTTGCAGCGAATGGGAATTGGCCTCTTT
CTGTCAGTTCTCTGCATGTCTGCTGCTGCTGTGGTTGAGA
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