CV712165

Overview
NameCV712165
Unique NameCV712165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6640 contig Csv1_Contig6640:67..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712165 vs. ExPASy Swiss-Prot
Match: SPOPL_HUMAN (Speckle-type POZ protein-like OS=Homo sapiens GN=SPOPL PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.825e-21
Identity = 60/179 (33.52%), Postives = 95/179 (53.07%), Query Frame = -3
Query:  336 ERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVXKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKA----------------VMQTDGFEYLKESCPSVLTELLQYVA 824
            + F AHK VLA RSPVF A     +++     +++ D++  V K ++ FIY    P+++             MA +LLAAAD+YALERLK++CE  LC ++++  VA TL LA+ H   QLKA  + FI     L+                 +M+T G++ + +S P ++ E  + +A
Sbjct:  209 QEFKAHKSVLAARSPVFNAMFEHEMEESKKNRVEINDLDPEVFKEMMRFIYTGRAPNLDK------------MADNLLAAADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNSNQATDIMETSGWKSMIQSHPHLVAEAFRALA 375          
BLAST of CV712165 vs. ExPASy Swiss-Prot
Match: SPOPL_MOUSE (Speckle-type POZ protein-like OS=Mus musculus GN=Spopl PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.935e-21
Identity = 59/179 (32.96%), Postives = 95/179 (53.07%), Query Frame = -3
Query:  336 ERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVXKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKA----------------VMQTDGFEYLKESCPSVLTELLQYVA 824
            + F AHK VLA RSPVF A     +++     +++ D++  V K ++ F+Y    P+++             MA +LLAAAD+YALERLK++CE  LC ++++  VA TL LA+ H   QLKA  + FI     L+                 +M+T G++ + +S P ++ E  + +A
Sbjct:  209 KEFKAHKSVLAARSPVFNAMFEHEMEECTKNRVEINDLDPEVFKEMMRFVYTGKAPNLDK------------MADNLLAAADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNNNQATDIMETSGWKSMIQSHPHLVAEAFRALA 375          
BLAST of CV712165 vs. ExPASy Swiss-Prot
Match: SPOLA_DANRE (Speckle-type POZ protein-like A OS=Danio rerio GN=spopla PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.058e-21
Identity = 61/179 (34.08%), Postives = 92/179 (51.40%), Query Frame = -3
Query:  336 ERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVXKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKA----------------VMQTDGFEYLKESCPSVLTELLQYVA 824
            + F AHK +LA RSPVF A     +++     + + D+E  V K ++ FIY    P++E             MA  LLAAAD+YALERLK++CE  LC  +++  VA TL LA+ H   QLKA  + FI     L+                 +M+T G++ + +S P ++ E  + +A
Sbjct:  209 QEFKAHKSILAARSPVFNAMFEHEMEESKKNRVDISDVEPEVFKEMMGFIYTGKAPNLEK------------MADSLLAAADKYALERLKVMCEEALCNSLSVENVADTLILADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNSNHATDIMETAGWKSMIQSHPHLVAEAFRALA 375          
BLAST of CV712165 vs. ExPASy Swiss-Prot
Match: SPOP_DANRE (Speckle-type POZ protein OS=Danio rerio GN=spop PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.545e-20
Identity = 57/163 (34.97%), Postives = 88/163 (53.99%), Query Frame = -3
Query:  336 ERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVXKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLKESCPSVLTELLQYVA 824
            + F AHK +LA RSPVF A     +++     +++ D+E  V K ++ FIY    P+++             MA  LLAAAD+YALERLK++CE  LC  +++   A  L LA+ H   QLK   + FI    +   VM+T G++ +  S P ++ E  + +A
Sbjct:  209 QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEAEVFKEMMFFIYTGKAPNLDK------------MADDLLAAADKYALERLKVMCEDALCTSLSVENAAEILILADLHSADQLKTQAVDFI--NYHASDVMETSGWKSMVASHPHLVAEAYRSLA 357          
BLAST of CV712165 vs. ExPASy Swiss-Prot
Match: SPOPL_XENLA (Speckle-type POZ protein-like OS=Xenopus laevis GN=spopl PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.442e-20
Identity = 58/179 (32.40%), Postives = 90/179 (50.28%), Query Frame = -3
Query:  336 ERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVXKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFI----------------ASPENLKAVMQTDGFEYLKESCPSVLTELLQYVA 824
            + F AHK +LA RSPVF A    P+++     + + D++  V K ++ FIY    P ++             MA  LLAAAD+YALERLK++CE  LC ++ +  VA  L LA+ H   QLKA  + FI                 +      +M+T G++ + +S P ++ E  + +A
Sbjct:  209 KEFKAHKSILAARSPVFSAMFEHPMQESRKNRVYIRDVDPEVFKEMMRFIYTGGTPHVDK------------MADKLLAAADKYALERLKVMCEESLCNNLTVENVADVLILADLHSAEQLKAQAIDFINRCSVLGQLGCKDRKNCNSNQTMDIMETAGWKSMIKSHPHLVAEAFRALA 375          
BLAST of CV712165 vs. ExPASy Swiss-Prot
Match: SPOLB_DANRE (Speckle-type POZ protein-like B OS=Danio rerio GN=spoplb PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.442e-20
Identity = 60/179 (33.52%), Postives = 92/179 (51.40%), Query Frame = -3
Query:  336 ERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVXKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKA----------------VMQTDGFEYLKESCPSVLTELLQYVA 824
            + F AHK +LA RSPVF A     +++     + + D+E  V + ++ FIY    P++E             MA +LLAAAD+YALERLK+LCE  LC  +++  VA  L LA+ H   QLKA  + FI     L+                 +M+T G++ + +S P ++ E  + +A
Sbjct:  209 QEFKAHKSILAARSPVFNAMFEHKMEESKKNRVDISDVEPDVFREMMVFIYTGKAPNLEK------------MADNLLAAADKYALERLKVLCEEALCNSLSVENVADVLILADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNSNHAADIMETAGWKAMIQSHPHLVAEAFRALA 375          
BLAST of CV712165 vs. ExPASy Swiss-Prot
Match: SPOP_PONAB (Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.668e-20
Identity = 56/163 (34.36%), Postives = 89/163 (54.60%), Query Frame = -3
Query:  336 ERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVXKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLKESCPSVLTELLQYVA 824
            + F AHK +LA RSPVF A     +++     +++ D+E  V K ++ FIY    P+++             MA  LLAAAD+YALERLK++CE  LC ++++   A  L LA+ H   QLK   + FI    +   V++T G++ +  S P ++ E  + +A
Sbjct:  209 QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK------------MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI--NYHASDVLETSGWKSMVVSHPHLVAEAYRSLA 357          
BLAST of CV712165 vs. ExPASy Swiss-Prot
Match: SPOP_MOUSE (Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.668e-20
Identity = 56/163 (34.36%), Postives = 89/163 (54.60%), Query Frame = -3
Query:  336 ERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVXKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLKESCPSVLTELLQYVA 824
            + F AHK +LA RSPVF A     +++     +++ D+E  V K ++ FIY    P+++             MA  LLAAAD+YALERLK++CE  LC ++++   A  L LA+ H   QLK   + FI    +   V++T G++ +  S P ++ E  + +A
Sbjct:  209 QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK------------MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI--NYHASDVLETSGWKSMVVSHPHLVAEAYRSLA 357          
BLAST of CV712165 vs. ExPASy Swiss-Prot
Match: SPOP_HUMAN (Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.668e-20
Identity = 56/163 (34.36%), Postives = 89/163 (54.60%), Query Frame = -3
Query:  336 ERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVXKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLKESCPSVLTELLQYVA 824
            + F AHK +LA RSPVF A     +++     +++ D+E  V K ++ FIY    P+++             MA  LLAAAD+YALERLK++CE  LC ++++   A  L LA+ H   QLK   + FI    +   V++T G++ +  S P ++ E  + +A
Sbjct:  209 QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK------------MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI--NYHASDVLETSGWKSMVVSHPHLVAEAYRSLA 357          
BLAST of CV712165 vs. ExPASy Swiss-Prot
Match: SPOP_BOVIN (Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.668e-20
Identity = 56/163 (34.36%), Postives = 89/163 (54.60%), Query Frame = -3
Query:  336 ERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVXKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLKESCPSVLTELLQYVA 824
            + F AHK +LA RSPVF A     +++     +++ D+E  V K ++ FIY    P+++             MA  LLAAAD+YALERLK++CE  LC ++++   A  L LA+ H   QLK   + FI    +   V++T G++ +  S P ++ E  + +A
Sbjct:  209 QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK------------MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI--NYHASDVLETSGWKSMVVSHPHLVAEAYRSLA 357          
The following BLAST results are available for this feature:
BLAST of CV712165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SPOPL_HUMAN1.825e-2133.52Speckle-type POZ protein-like OS=Homo sapiens GN=S... [more]
SPOPL_MOUSE6.935e-2132.96Speckle-type POZ protein-like OS=Mus musculus GN=S... [more]
SPOLA_DANRE9.058e-2134.08Speckle-type POZ protein-like A OS=Danio rerio GN=... [more]
SPOP_DANRE1.545e-2034.97Speckle-type POZ protein OS=Danio rerio GN=spop PE... [more]
SPOPL_XENLA3.442e-2032.40Speckle-type POZ protein-like OS=Xenopus laevis GN... [more]
SPOLB_DANRE3.442e-2033.52Speckle-type POZ protein-like B OS=Danio rerio GN=... [more]
SPOP_PONAB7.668e-2034.36Speckle-type POZ protein OS=Pongo abelii GN=SPOP P... [more]
SPOP_MOUSE7.668e-2034.36Speckle-type POZ protein OS=Mus musculus GN=Spop P... [more]
SPOP_HUMAN7.668e-2034.36Speckle-type POZ protein OS=Homo sapiens GN=SPOP P... [more]
SPOP_BOVIN7.668e-2034.36Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001A06_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712165 ID=CV712165; Name=CV712165; organism=Citrus sinensis; type=EST; length=826bp
AGTCACTTGCAGGTGCAGCTTAAAATCGATTCACCAGTCTTTTAACTTCC
AGGAACTGCACAGGAAACAAACTTTCAACACCCAGATGTTCAAAAATTGT
AGAAAATATTAATGAACCACTAATGTTATATTTAACAAATAATTTATCAA
CTGTTAGTATAATCCAAAAATGTTTGGACCTAACTTTTTTTTTCCGGGGT
GGTAAAGATAATGGAAGATCAGTCATTCCTTTATCAATGTACCCTCTGCT
TCACCCGCCTCCCATTGACATCACAGCCATCTGGTAATGTCTCGTTCCCA
TGCCCTGAAGCAATGACAGAATGCTCGCCTATTTTGGCCACATATTGTAG
CAGTTCGGTGAGGACAGAAGGGCAACTTTCTTTTAAGTATTCAAACCCAT
CTGTTTGCATCACAGCTTTTAAATTTTCAGGTGATGCAATGAATTTGAGA
CAAACAGCTTTCAGTTGGGAACAGTGATGCTGCTCTGCCAAGGCCAACGT
GGTGGCAACAGTGTTTATAGCAACATCTTCACAGAGCTTAGCCTCACAGA
GTAATTTGAGCCTCTCAAGTGCATACCGGTCTGCTGCAGCAAGAAGATGC
TGAGCCATCAGTGTAGAAGCCCATTTTGGACTCAGATCAACAAGGTCTTC
CATATCTGGCAGAGCATCCCAGTAGATAAAATGCAATAATGCCTTANAAA
CTGGGACTTCCATGTCTTCCACCTTAATGCATTGAGTGTTTTGATCCTTT
AATGGACCAAAAAGTTGTGCCTTGAACACAGGTGAACGTGTAGCAAGTAC
CAACTTGTGGGCAGCAAACCTTTCTC
back to top