CV712164

Overview
NameCV712164
Unique NameCV712164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11376 contig Csv1_Contig11376:896..1571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.776e-87
Identity = 162/224 (72.32%), Postives = 188/224 (83.93%), Query Frame = 1
Query:    4 ELKSVQSSSSIDTKTFDTAVSINLRPPPIDRHKSFDEEDFSXXXXXXXXXXXXX-TNVTSYSIADLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLAS 672
            E  S+QSSSS++TK  DT++SINLRPPPIDR+KSFD+ED +              +NV  YS+ADLQ+ATGSF+V+NLLG GTFGRVYRA+F DGKVLAVKKIDSSALP  M DDFIEMVS I+ L HPN+ +LVGYC+E+GQHL+VYEF KNGSLHDFLHLS+E++K L+WNSRVKIALGTARALEYLHEVCS S+V KNIKSANILLD+ELNP LSD GLAS
Sbjct:  344 ENNSIQSSSSVETKKLDTSLSINLRPPPIDRNKSFDDEDSTRKPIAVKKSTVVVPSNVRLYSVADLQIATGSFSVDNLLGEGTFGRVYRAEFDDGKVLAVKKIDSSALPHGMTDDFIEMVSKIANLDHPNVTKLVGYCAEHGQHLVVYEFHKNGSLHDFLHLSEEESKALVWNSRVKIALGTARALEYLHEVCSPSIVDKNIKSANILLDSELNPHLSDSGLAS 567          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.032e-83
Identity = 152/226 (67.26%), Postives = 185/226 (81.86%), Query Frame = 1
Query:    1 QELKSVQSSSSIDTKTFDTAVSINLRPPPIDRHKSFDEEDFSXXXXXXXXXXXXX--TNVTSYSIADLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLAS 672
            QE KSVQ+   ++TK  DT++S+NLRPPP +RHKSFD++D +               +NV +Y+++DLQ+AT SF+V+NLLG GTFGRVYRAQF DGKVLAVKKIDSSALP++  DDF E+VS I+ L H N+ +L GYCSE+GQHL+VYEF +NGSLHDFLHL++E++KPLIWN RVKIALGTARALEYLHEVCS S+VHKNIKSANILLD+ELNP LSD GLAS
Sbjct:  345 QENKSVQNPPLVETKKLDTSLSMNLRPPPSERHKSFDDDDSTMRKPIVAKKAAVVVPSNVNTYTVSDLQVATNSFSVDNLLGEGTFGRVYRAQFEDGKVLAVKKIDSSALPTDTADDFTEIVSKIAHLDHENVTKLDGYCSEHGQHLVVYEFHRNGSLHDFLHLAEEESKPLIWNPRVKIALGTARALEYLHEVCSPSIVHKNIKSANILLDSELNPHLSDSGLAS 570          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.993e-55
Identity = 100/166 (60.24%), Postives = 135/166 (81.33%), Query Frame = 1
Query:  175 TSYSIADLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLAS 672
            + Y+++ LQ+AT SF+ EN++G G+ GRVYRA+F +GK++A+KKID++AL  +  D+F+E VSN+S+L HPNI+ L GYC+E+GQ LLVYE+  NG+L D LH +D+ +  L WN+RVK+ALGTA+ALEYLHEVC  S+VH+N KSANILLD ELNP LSD GLA+
Sbjct:  381 SQYTVSSLQVATNSFSQENIIGEGSLGRVYRAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHPNIVPLAGYCTEHGQRLLVYEYVGNGNLDDTLHTNDDRSMNLTWNARVKVALGTAKALEYLHEVCLPSIVHRNFKSANILLDEELNPHLSDSGLAA 546          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.588e-54
Identity = 110/222 (49.55%), Postives = 151/222 (68.02%), Query Frame = 1
Query:   10 KSVQSSSSIDTK-TFDTAVSINLRPPPIDRHKSFDEEDFSXXXXXXXXXXXXXTNVTSYSIADLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLAS 672
            K+V S++S++TK +     S++ +  P        +   +               V ++S+ADLQ     F+   LLG GT GRVY+A+F DG+  AVK+IDSS L     ++F  +VS+IS +HH N+ ELVGYCSE G+++LVYE+  +GSLH FLHLSD+ +KPL WN+R++IALGTA+A+EYLHE CS  +VHKNIKS+NILLDNELNP+LSD GLA+
Sbjct:  345 KTVDSNTSLETKPSVKRTSSVSFKNSPTFHLIPSTQVAATPDRSSTSQDSPDTRGVKAFSLADLQNTASCFSPNRLLGEGTIGRVYKAKFQDGRKFAVKEIDSSLLGKGNPEEFSHIVSSISSIHHKNMAELVGYCSEQGRNMLVYEYFTSGSLHRFLHLSDDFSKPLTWNTRIRIALGTAKAIEYLHETCSPPLVHKNIKSSNILLDNELNPRLSDYGLAN 566          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.191e-53
Identity = 100/167 (59.88%), Postives = 132/167 (79.04%), Query Frame = 1
Query:  169 NVTSYSIADLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLA 669
            +   + ++DLQ AT +F+  NLLG G+ GRVYRA+++DG+ LAVKKIDS+   S   +    +V ++S++ H NI ELVGYCSE G ++LVYE+ +NGSLH+FLHLSD  +KPL WN+RV+IALGTARA+EYLHE CS SV+HKNIKS+NILLD +LNP+LSD GL+
Sbjct:  388 SAVEFELSDLQSATANFSPGNLLGEGSIGRVYRAKYSDGRTLAVKKIDSTLFDSGKSEGITPIVMSLSKIRHQNIAELVGYCSEQGHNMLVYEYFRNGSLHEFLHLSDCFSKPLTWNTRVRIALGTARAVEYLHEACSPSVMHKNIKSSNILLDADLNPRLSDYGLS 554          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.507e-49
Identity = 95/168 (56.55%), Postives = 121/168 (72.02%), Query Frame = 1
Query:  166 TNVTSYSIADLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLA 669
            T+V  YSIA LQ  T SF  ENL+G G  G VYRA+  +GK+ AVKK+D  A   +   +FIE+V+NI  + H NI+ELVGYC+E+ Q LLVYE+  NG+L D LH  DE  K L WN+RV +ALG ARALEYLHEVC   ++H+N KSAN+LLD++L+  +SDCGLA
Sbjct:  468 TSVKHYSIASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLA 635          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.428e-44
Identity = 84/168 (50.00%), Postives = 118/168 (70.24%), Query Frame = 1
Query:  166 TNVTSYSIADLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLA 669
            T V  +++A LQ  T SF+ ENL+G G  G VYRA+   GK+ AV+K+D  +   E    F+E+V+NI ++ H NI++LVG+CSE+ Q LL++E+ +NG+LHD LH+ D     L WN RV+IAL  A+ALEYLHE+C    +H+N KSANILLD+++   +SDCGLA
Sbjct:  461 TAVKHFTVASLQQHTNSFSHENLIGTGMLGSVYRAELPGGKLFAVRKLDKKSPNHEEEGKFLELVNNIDRIRHANIVQLVGFCSEHSQRLLIHEYCRNGTLHDLLHIDDRLKIELSWNVRVRIALEAAKALEYLHEICDPPSIHRNFKSANILLDDDIRVHVSDCGLA 628          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.473e-41
Identity = 80/168 (47.62%), Postives = 121/168 (72.02%), Query Frame = 1
Query:  166 TNVTSYSIADLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLA 669
            ++ T ++IA LQ  T +F+ EN++G G+ G VYRA+   GK LAVKK+ ++   ++   +F+ +VSN+ +L   +I+EL+GYC+E+GQ LLVYE+  NGSL D LHL  + +K L WN R+ IALG ++AL++LHEVC   VVH+N KS+ +LLD +L+ +++D GLA
Sbjct:  480 SSATVFTIASLQQYTNNFSEENIIGEGSIGNVYRAELRHGKFLAVKKLSNTINRTQSDGEFLNLVSNVLKLKRGHILELLGYCNEFGQRLLVYEYCPNGSLQDALHLDRKLHKKLTWNVRINIALGASKALQFLHEVCQPPVVHQNFKSSKVLLDGKLSVRVADSGLA 647          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: SRF2_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.396e-38
Identity = 79/164 (48.17%), Postives = 111/164 (67.68%), Query Frame = 1
Query:  181 YSIADLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLAS 672
            +S A+LQ+AT  F+ ENLLG G  G VYRA+  DG+   V+ I  S+L     + F E++   S+L HPNI+ L+G+C E G+HLLVYE+  + SL++ +H  DE  KPL W  R++IA+G ARAL+YLH      + H ++K+ NILLD EL P+++DCGLAS
Sbjct:  403 FSAAELQLATNCFSEENLLGEGPLGSVYRAKLPDGQFAVVRNIPMSSLSLHEEEQFTEVLQTASKLRHPNIVTLLGFCIENGEHLLVYEYVGHLSLYNAMH--DEVYKPLSWGLRLRIAIGVARALDYLHSSFCPPIAHSDLKATNILLDEELTPRIADCGLAS 564          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.928e-33
Identity = 72/166 (43.37%), Postives = 106/166 (63.86%), Query Frame = 1
Query:  172 VTSYSIADLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLA 669
            + S+S+  +++AT +F+  N +G G FG VY+ +  DG ++AVK++ + +       +F+  +  IS LHHPN+++L G C E GQ LLVYEF +N SL   L    E    L W +R KI +G AR L YLHE   L +VH++IK+ N+LLD +LNP++SD GLA
Sbjct:  609 IASFSLRQIKIATNNFDSANRIGEGGFGPVYKGKLFDGTIIAVKQLSTGSKQGNR--EFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARALFGPQETQLRLDWPTRRKICIGVARGLAYLHEESRLKIVHRDIKATNVLLDKQLNPKISDFGLA 772          
The following BLAST results are available for this feature:
BLAST of CV712164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
SRF6_ARATH1.776e-8772.32Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SRF7_ARATH2.032e-8367.26Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
SRF8_ARATH3.993e-5560.24Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
SRF4_ARATH2.588e-5449.55Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
SRF5_ARATH2.191e-5359.88Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
SRF3_ARATH2.507e-4956.55Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
SRF1_ARATH2.428e-4450.00Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
SUB_ARATH1.473e-4147.62Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
SRF2_ARATH3.396e-3848.17Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsi... [more]
Y1534_ARATH1.928e-3343.37Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A05_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712164 ID=CV712164; Name=CV712164; organism=Citrus sinensis; type=EST; length=676bp
CAAGAATTGAAGTCGGTACAGAGTTCCTCTTCCATCGACACAAAGACATT
TGACACTGCTGTCTCTATAAATCTACGACCCCCACCAATTGATCGTCACA
AATCATTTGATGAAGAAGACTTTTCAAAGAAGCCCATTGTCGTCAAGAAA
GCTGTTAAAGCTCCCACAAATGTAACATCATATTCTATAGCCGACCTGCA
GATGGCTACTGGCAGCTTCAATGTTGAAAACCTCCTAGGTGGGGGAACTT
TTGGACGTGTTTATCGAGCACAATTTGCCGATGGAAAGGTTCTTGCAGTG
AAGAAAATAGATTCATCTGCCCTTCCCAGTGAAATGTGTGATGATTTTAT
CGAGATGGTTTCAAACATATCCCAGCTGCATCACCCGAACATAATGGAGC
TAGTGGGTTATTGTTCGGAGTATGGACAGCACCTGCTAGTGTATGAGTTC
CGTAAAAATGGTTCACTGCACGACTTCTTGCATCTGTCGGATGAAGACAA
CAAGCCTTTGATATGGAACTCCCGTGTCAAGATTGCTTTGGGGACTGCAC
GAGCACTGGAGTACCTGCATGAAGTCTGCTCACTGTCAGTTGTTCACAAA
AATATTAAGTCGGCCAACATATTACTGGACAACGAGCTCAATCCTCAACT
TTCTGACTGTGGCCTGGCAAGCAATA
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