CV712160

Overview
NameCV712160
Unique NameCV712160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2910 contig Csv1_Contig2910:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712160 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.260e-30
Identity = 66/154 (42.86%), Postives = 105/154 (68.18%), Query Frame = 1
Query:   49 LSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTAR--HRPESSEGTSE-KKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEQRKQMENEKSKASSSS 501
            L +T   K R+RWT ELHE FV+AV +LGG ++ATPK ++++M V+ LT+YH+KSHLQK+R  +  H+      T E  +++  +  +++ + + M       +QMEVQ+RLHEQLE+QR+LQLRIE QG+Y+Q + E+  Q    ++ A++++
Sbjct:   27 LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLAGENMAAATA 180          
BLAST of CV712160 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   76 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTAR----HRPESSEGTSEKK 279
            R+RWTPELH +FV AV+ LGG  +ATPK VLK+M+V+ LTI HVKSHLQ YR +R     +PE S   S ++
Sbjct:   25 RLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLLGKPEESSSPSSRR 96          
The following BLAST results are available for this feature:
BLAST of CV712160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APL_ARATH8.260e-3042.86Myb family transcription factor APL OS=Arabidopsis... [more]
MYBF_ARATH5.747e-1556.94Putative Myb family transcription factor At1g14600... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001A03_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712160 ID=CV712160; Name=CV712160; organism=Citrus sinensis; type=EST; length=705bp
CAACATCAACCTGTGTCAAATGAAGAATTTCATGCTGTTGCTAATCCATT
GTCCATGACACCAGCAAACAAATCCAGAATGCGTTGGACTCCAGAACTTC
ATGAGGCATTTGTGGAGGCTGTCAATCGGCTGGGTGGCGGTGAACGAGCT
ACTCCAAAAGGTGTCTTAAAGCTCATGAATGTTGAAAATCTGACCATTTA
TCATGTTAAAAGCCACCTCCAGAAATATAGAACAGCTAGACACAGACCAG
AGTCTTCAGAAGGAACATCAGAGAAAAAATCGAATCCTACCGAAGATATG
AAATCTCTGGACACGAAAACGACTATGAGCATCACTGAAGCATTGCGATT
GCAGATGGAAGTTCAAAAGCGACTTCATGAACAACTTGAGATTCAGAGAA
ATTTGCAGTTGCGTATAGAAGAACAGGGAAGATATCTTCAGATGATGTTT
GAGCAACGAAAACAGATGGAGAACGAAAAGTCCAAGGCCTCTTCATCCAG
CCTCGAAAATCCCTCTGCGCCTTTGTTCGAGTCAAAGCAACATTCTTCTC
CAAATGAAACATCAATGGCCACAGAACTGGATGTTGCCAAAACAGGAGCA
GACACCAGTCATGTAATCTCTGCACCGGAAGATAGTTCTGCAAGCTTAAA
CCAGAAGCAGAAAGCACCAGAAACCAAGACTGGTGAAGAAGTTGACCCGG
ACGAT
back to top