CN192490

Overview
NameCN192490
Unique NameCN192490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:882..1557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192490 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.261e-47
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = -2
Query:  356 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 574
            VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD
Sbjct:  283 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355          

HSP 2 Score: 65.0846 bits (157), Expect = 1.261e-47
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = -1
Query:  576 VKRWKSIGMIEEVPGMKALDMNSAEDAIVRLTRE 677
            VKR KSIGMIEEVPGMKALDMNSAEDAIVRLTRE
Sbjct:  249 VKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTRE 282          
BLAST of CN192490 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.461e-42
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = -2
Query:  356 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 574
            +VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELILAAADSAE AD
Sbjct:  279 IVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIAD 351          

HSP 2 Score: 55.8398 bits (133), Expect = 2.461e-42
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = -1
Query:  576 VKRWKSIGMIEEVPGMKALDMNSAEDAIVRLTRE 677
            VK  +SIGMI+ VPGMKALDMN AEDAIVRLTRE
Sbjct:  245 VKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTRE 278          
BLAST of CN192490 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.897e-40
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = -2
Query:  356 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 574
            VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct:  276 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348          

HSP 2 Score: 60.8474 bits (146), Expect = 4.897e-40
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = -1
Query:  576 VKRWKSIGMIEEVPGMKALDMNSAEDAIVRLTRE 677
            VKR KSIGMI+ VPGMKALDMN+AEDAIVRLTRE
Sbjct:  242 VKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTRE 275          
BLAST of CN192490 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.093e-32
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = -2
Query:  374 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAAD 574
            VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++A  D
Sbjct:  282 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMIAYKD 348          

HSP 2 Score: 54.6842 bits (130), Expect = 1.093e-32
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = -1
Query:  576 VKRWKSIGMIEEVPGMKALDMNSAEDAIVRLTRE 677
            VKR + IGMI  VPGMKALDMN+AED IVRLTRE
Sbjct:  248 VKRLQDIGMISAVPGMKALDMNTAEDEIVRLTRE 281          
BLAST of CN192490 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.533e-31
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = -2
Query:  374 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHP----ELILAAAD 574
            VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT +  V P    E ++A+ D
Sbjct:  279 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT-IPEVSPALREEFVIASKD 348          

HSP 2 Score: 54.6842 bits (130), Expect = 1.533e-31
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = -1
Query:  576 VKRWKSIGMIEEVPGMKALDMNSAEDAIVRLTRE 677
            VKR + IGMI  VPGMKALDMN+AED IVRLTRE
Sbjct:  245 VKRLQDIGMISAVPGMKALDMNAAEDEIVRLTRE 278          
BLAST of CN192490 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.485e-16
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = -2
Query:  452 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 574
            +VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  273 IVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          

HSP 2 Score: 43.5134 bits (101), Expect = 2.485e-16
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = -1
Query:  576 VKRWKSIGMIEEVPGMKALDMNSAEDAIVRLTRE 677
            VKR  S+G IE++ GM+ LDMN AEDAIV+ TRE
Sbjct:  239 VKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTRE 272          
BLAST of CN192490 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 3.420e-15
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = -2
Query:  452 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 574
            +VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  269 IVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          

HSP 2 Score: 40.4318 bits (93), Expect = 3.420e-15
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = -1
Query:  576 VKRWKSIGMIEEVPGMKALDMNSAEDAIVRLTRE 677
            VKR  S+  IE++ GM+ LDMN AEDAIV+ TRE
Sbjct:  235 VKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTRE 268          
BLAST of CN192490 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 2.777e-14
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = -2
Query:  452 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 574
            V  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  276 VTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          

HSP 2 Score: 43.1282 bits (100), Expect = 2.777e-14
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = -1
Query:  576 KRWKSIGMIEEVPGMKALDMNSAEDAIVRLTRE 674
            KR  S+G ++++ GM+ LDMNSAEDAIV+ TRE
Sbjct:  243 KRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTRE 275          
BLAST of CN192490 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.683e-14
Identity = 30/55 (54.55%), Postives = 44/55 (80.00%), Query Frame = -2
Query:  410 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 574
            ++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  281 ILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          

HSP 2 Score: 31.5722 bits (70), Expect = 4.683e-14
Identity = 17/34 (50.00%), Postives = 20/34 (58.82%), Query Frame = -1
Query:  576 VKRWKSIGMIEEVPGMKALDMNSAEDAIVRLTRE 677
            VKR  S G+ E +  M+ LDM  AED I   TRE
Sbjct:  247 VKRVASAGLSEGLGDMRPLDMERAEDHIANKTRE 280          
BLAST of CN192490 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 6.412e-13
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = -2
Query:  413 VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 574
            V PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  275 VFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          

HSP 2 Score: 33.8834 bits (76), Expect = 6.412e-13
Identity = 17/34 (50.00%), Postives = 22/34 (64.71%), Query Frame = -1
Query:  576 VKRWKSIGMIEEVPGMKALDMNSAEDAIVRLTRE 677
            VKR  S  ++  +  M+ LDMN AED IV+ TRE
Sbjct:  241 VKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTRE 274          
The following BLAST results are available for this feature:
BLAST of CN192490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
THI4_CITSI1.261e-47100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL2.461e-4291.78Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH4.897e-4084.93Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE1.093e-3279.10Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.533e-3176.06Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH2.485e-1670.73Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX3.420e-1570.73Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR2.777e-1465.85Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_UROFA4.683e-1454.55Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO6.412e-1357.41Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006P16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192490 ID=CN192490; Name=CN192490; organism=Citrus sinensis; type=EST; length=677bp
GAGGCAGCACTGTCCCATTGGCTGATGCCTCAAGTTATAAACATACAAAG
CAAAGAAAAGGGAACAGCCCAAGGGCAGTCTTACACATAATACAGATAAC
AAGGACTAGATACGCAACTGCAAATTCACCCCCGAAAAACTCACAACGGT
TTCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTGCATGATGGACCG
GAAACAAACACTTTATTCACAAAACCTCACAACATCATCTCATTATTCGC
ATCAACCATCCATCACAACCACCTAAATACAACTACTTTTTTGCCAGAGT
TTATTTGCATGCACACAGCTGATGAGTGATGATGCCTGTTATTATCAAAT
TAACCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAAGATCAGCTCAGG
GTGAACACCTCCCACATATGTACCGTCTAATGCATTCGGCTGGCCCAGTG
ACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATCATCATTGCTCCA
AATGTTGGCCCCATTCTAGGAGCACCATCAATCTCGGCAACTTCCATGCC
GGTAACTATCATACCAGGCACAACCCTCCCTGGTCAGCCTCACAATAGCA
TCTTCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGCACTTCCTCAAT
CATTCCGATACTCTTCCACCTCTTTAC
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