CN192486

Overview
NameCN192486
Unique NameCN192486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length369
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5486 contig Csv1_Contig5486:20..388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.257e-42
Identity = 83/93 (89.25%), Postives = 89/93 (95.70%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKI 320
            MVSLK+QKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTREARLPTKI
Sbjct:    1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKI 93          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.642e-42
Identity = 83/93 (89.25%), Postives = 90/93 (96.77%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKI 320
            MVSLKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTREARLPTK+
Sbjct:    1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKV 93          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 5.281e-41
Identity = 81/93 (87.10%), Postives = 89/93 (95.70%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKI 320
            MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTREARLPTK+
Sbjct:    1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKV 93          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 6.252e-34
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKI 320
            M SLKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR R R+  EA+RKGRH G+GKRKGT  AR+PTK+
Sbjct:    1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKL 93          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.011e-32
Identity = 63/93 (67.74%), Postives = 78/93 (83.87%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKI 320
            MVSLKLQKRL+AS+LKCG+G+VW+DPNE+ +++MANSR N+R+L+  GFI+RKP  +HSRSRAR    AKR GRH G G R GTREARLP+KI
Sbjct:    1 MVSLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKI 93          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.011e-32
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKI 320
            M +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQNIRKLVKDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ +
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTV 93          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 3.431e-32
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKI 320
            M +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQN+RKL+KDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ +
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAV 93          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.643e-32
Identity = 63/92 (68.48%), Postives = 79/92 (85.87%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTK 317
            M +L+LQKRL+++VLKCG+ +VWLDPNEV+EIS ANSRQ+IR+LV DG IIRKP  +HSR RAR  +EA+RKGRH+GYGKR+GT  AR+P K
Sbjct:    1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEK 92          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.470e-31
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKI 320
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKL 93          
BLAST of CN192486 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.470e-31
Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = 3
Query:   42 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKI 320
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKV 93          
The following BLAST results are available for this feature:
BLAST of CN192486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RL192_ARATH1.257e-4289.2560S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL191_ARATH1.642e-4289.2560S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL193_ARATH5.281e-4187.1060S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL19_DROME6.252e-3470.9760S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_DICDI2.011e-3267.7460S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19B_SCHPO2.011e-3268.8260S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19A_SCHPO3.431e-3266.6760S ribosomal protein L19-A OS=Schizosaccharomyces... [more]
RL19_CAEEL7.643e-3268.4860S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19_XENLA6.470e-3167.7460S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT6.470e-3166.6760S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006P14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192486 ID=CN192486; Name=CN192486; organism=Citrus sinensis; type=EST; length=369bp
GAGGATCGCGAGAGACAGAGGGGGAGAGAAGAGAAGGGAAAATGGTGTCG
TTGAAGTTACAGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGG
CAAGGTCTGGCTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACT
CCAGGCAGAACATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAG
CCAACAAAGATCCACTCCCGTTCTCGCGCTCGCAGAATGAAGGAAGCCAA
GAGGAAGGGCCGTCACTCTGGATATGGTAAGAGAAAGGGTACTAGGGAGG
CGAGGCTTCCCACCAAAATCCTCTGGATGAGAAGGATGCGTGTGCTCAGG
CGGTTGCTCCGCAAATACC
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