CN192484

Overview
NameCN192484
Unique NameCN192484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN192484_ssr29 microsatellite CN192484_ssr29:29..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7095 contig Csv1_Contig7095:166..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192484 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.821e-41
Identity = 80/196 (40.82%), Postives = 129/196 (65.82%), Query Frame = 3
Query:   75 KVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFA-DPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYAL 659
            K+GINYGR  NNLPSP + +  +KS +   VK YD D   L  L+ +++ V +  PN +++  +++Q+  D WV+ NI  YYP T+I  V VGNE+ + +  N +  LVPAM+ + NSL  + +  N+KV +P+A+ +L++S+PPS+G+F+ ++  P + P+L+FL  T+SY  +N +P+F +S N    SLD+AL
Sbjct:   41 KIGINYGRRGNNLPSPYQSINFIKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITALSSNQTIADEWVRTNILPYYPQTQIRFVLVGNEILSYNSGNVSVNLVPAMRKIVNSLRLHGI-HNIKVGTPLAMDSLRSSFPPSNGTFREEITGPVMLPLLKFLNGTNSYFFLNVHPYFRWSRNPMNTSLDFAL 235          
BLAST of CN192484 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 2.378e-41
Identity = 84/196 (42.86%), Postives = 128/196 (65.31%), Query Frame = 3
Query:   78 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEV--FADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYAL 659
            VG+ YG + NNLP   +VV+L KS+ I R++ YD + A L AL  S+I V++  PN +L   AA+ S  +NWVQ N+  ++PA K   +AVGNEV       + T +L+PAM+N+ N++    L +N+KVSS + +  + NS+PPS GSF++D +   + P++ F+R+ +S L+VN YP+F+Y+ N   ISL YAL
Sbjct:   33 VGVCYGMLGNNLPPASQVVQLYKSKNIRRMRLYDPNQAALQALRGSNIEVMLGVPNSDLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGLQNNIKVSSSVDMTLIGNSFPPSQGSFRND-VRSFIDPIIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYAL 227          
BLAST of CN192484 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.056e-41
Identity = 85/197 (43.15%), Postives = 126/197 (63.96%), Query Frame = 3
Query:   72 GKVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPK-NTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYAL 659
            GKVG+ YGR A++LP+P KVV+L++   I  V+ YD +S VL A  N+ I +++  PN +L+  +  QS  D W++ ++  YYP TKI  + VG E   DP  N + F+VPAM+NV  +L K  L   +KVS+ ++LG L  S+PPS+G+F S      L+PMLEFL +  S  M++ YP++AY  + + +SLDY L
Sbjct:   24 GKVGVCYGRSADDLPTPSKVVQLIQQHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAESTDDPHINASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPSAGAFNSSYAY-FLRPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVL 219          
BLAST of CN192484 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.056e-41
Identity = 88/195 (45.13%), Postives = 124/195 (63.59%), Query Frame = 3
Query:   75 KVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYAL 659
            K+GI YGR A+NLPSP +V EL++   I  V+ YD +  VL A AN+ I +++  PN +L   A  QS  D W+  NI  YYP+TKI +++VG EV   P N T  ++PAM+N++ +L K  LD  +K+SS  +L  L  S+PPSS SF S      LKPMLEFL +  S  M++ YP++AY  + +K+ L+YAL
Sbjct:   26 KIGICYGRNADNLPSPNRVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNATGLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPSSASF-SKKHSAFLKPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYAL 219          
BLAST of CN192484 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 4.958e-39
Identity = 80/194 (41.24%), Postives = 119/194 (61.34%), Query Frame = 3
Query:   78 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYAL 659
            +G+N G   +++P P +VV LLK+Q I  ++ Y+ D  +L ALAN+ I V+++ PN++L       S   NWV+ N+  +YPAT I AV+VG+EV     N  P LV A+KNV+ +L+   LD  +KVS+P++   + + +PPS   F   L    + P+L FL+ T+SYLMVN YP+  Y  +   I LDYAL
Sbjct:   32 IGVNIGTDLSDMPHPTQVVALLKAQEIRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVLTSLSNAAPVLVSAIKNVHAALLSANLDKLIKVSTPLSTSLILDPFPPSQAFFNRSL-NAVIVPLLSFLQSTNSYLMVNVYPYIDYMQSNGVIPLDYAL 224          
BLAST of CN192484 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.476e-39
Identity = 79/198 (39.90%), Postives = 127/198 (64.14%), Query Frame = 3
Query:   69 TGKVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFA-DPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYAL 659
            T  +G+NYG++ +NLPSP  V+ L+KS    +VK YD +  +L A +N+ I  ++   NE LSK   D S    W++ N++ + PAT I  + +GNE+ A +  + T  L+PAM+ V+++L+   L   + V++  +L  L++S+PPS+G F+ DL++ +L P+LEF RKT S  ++NAYPFFAY  N  ++ LD+ L
Sbjct:   26 TTSIGVNYGQIGDNLPSPTDVIPLIKSIGATKVKLYDANPQILKAFSNTGIEFIIGLGNEYLSK-MKDPSKALTWIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGLSDQISVTTAHSLSILKSSFPPSAGEFQPDLLD-SLTPILEFHRKTDSPFLINAYPFFAYKGNPKEVPLDFVL 221          
BLAST of CN192484 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.884e-38
Identity = 79/194 (40.72%), Postives = 119/194 (61.34%), Query Frame = 3
Query:   78 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYAL 659
            +G+N G    N+PSP +VV LLKSQ I+RV+ YD D ++L A A++ + V+++ PN++L   +   +   NWV  N++ YYPAT I  +AVG+EV     N    LV A+K +  +LV   LD  +KVS+P +   + +S+PPS   F     +P + P+L+FL+ T S L++N YP+F Y  +   I LDYAL
Sbjct:   23 IGVNIGTEVTNMPSPTQVVALLKSQNINRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVLTSLTNAASVLVSALKYIQAALVTANLDRQIKVSTPHSSTIILDSFPPSQAFFNKTW-DPVIVPLLKFLQSTGSPLLLNVYPYFDYVQSNGVIPLDYAL 215          
BLAST of CN192484 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.461e-38
Identity = 82/195 (42.05%), Postives = 120/195 (61.54%), Query Frame = 3
Query:   78 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT-TPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYAL 659
            VGINYG++ANNLPSP +V  LL+S  I RVK YD D  VL + +NS +  ++   NE L   + D +   +W+Q  +  +   T+I ++ VGNE+F    +     L+PAMK+VY +L    L+  V V+S  +L  L  SYPPSSGSFK + I+  L+P+L+F  +  S  ++NAYPFFAY  +  ++ L+Y L
Sbjct:   29 VGINYGQIANNLPSPARVAVLLRSLNITRVKLYDADPNVLFSFSNSQVDFMIGLGNEYLQNMSTDPTKAQDWLQQRLEPHISKTRITSIVVGNEIFKTNDHVLIQSLLPAMKSVYAALTNLGLEKQVTVTSAHSLDILSTSYPPSSGSFKEEFIQ-YLQPLLDFHSQIESPFLINAYPFFAYKDSPKEVPLEYVL 222          
BLAST of CN192484 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.351e-38
Identity = 78/197 (39.59%), Postives = 124/197 (62.94%), Query Frame = 3
Query:   75 KVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEV--FADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYAL 659
            ++G+ YG + NNLPS  +V++L KS+ I R++ YD +   L AL  S+I V++  PN ++   ++       WVQ N+  ++P  KI+ +AVGNE+       N  PF VPA+ N+Y ++ +  L +++KVS+ + +  + NSYPPS GSF++D +     P++ FLR T + L+VN YP+F+YS N  +ISL YAL
Sbjct:   26 QIGVCYGMMGNNLPSHSEVIQLYKSRNIRRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHISSGMEHARWWVQKNVRDFWPHVKIKYIAVGNEISPVTGTSNLAPFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRND-VRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYAL 221          
BLAST of CN192484 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.351e-38
Identity = 86/195 (44.10%), Postives = 121/195 (62.05%), Query Frame = 3
Query:   78 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT-TPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYAL 659
            +GINYG+VANNLP P+ V+ LLKS    +VK YD D   L A A S   + VA  NE L++  +D      WV+ N+  Y P TKI A+ VGNEV    ++  T  L PAM++++ +LV   L+  + V++  +L  L  SYPPS+ SF+ DL+  +L P+L+F  KT S +++NAYPFFAY  N   +SLD+ L
Sbjct:   27 IGINYGQVANNLPPPKNVIPLLKSVGATKVKLYDADPQALRAFAGSGFELTVALGNEYLAQ-MSDPIKAQGWVKENVQAYLPNTKIVAIVVGNEVLTSNQSALTAALFPAMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPPSATSFRRDLL-GSLTPILDFHVKTGSPILINAYPFFAYEENPKHVSLDFVL 219          
The following BLAST results are available for this feature:
BLAST of CN192484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
EA6_ARATH1.821e-4140.82Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
GUB_NICPL2.378e-4142.86Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E1313_ARATH4.056e-4143.15Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E1312_ARATH4.056e-4145.13Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E132_ARATH4.958e-3941.24Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E1311_ARATH6.476e-3939.90Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E133_ARATH1.884e-3840.72Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E1314_ARATH2.461e-3842.05Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
E13B_SOLLC9.351e-3839.59Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]
E1310_ARATH9.351e-3844.10Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006P13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192484 ID=CN192484; Name=CN192484; organism=Citrus sinensis; type=EST; length=660bp
GAGGGGCGACCCTTGCTGCATTCTCTTCCTTCTTCTTCTTCTTTCTCGTA
ACCTTCGCTTTTGCAGATACTGGCAAGGTAGGTATAAATTACGGCAGAGT
TGCAAACAACTTACCGTCGCCGGAGAAAGTTGTGGAGCTGCTGAAATCTC
AAAGAATCGACCGAGTTAAAACATACGACACTGACTCAGCCGTACTCGCT
GCACTCGCGAACTCGGACATAAGCGTCGTCGTTGCGTTCCCCAATGAGGA
ACTCTCCAAGGCCGCAGCTGACCAGTCATTTACTGACAACTGGGTCCAGG
CCAATATCTCCAAGTACTACCCGGCAACGAAGATCGAGGCCGTCGCAGTG
GGCAACGAAGTCTTCGCAGACCCGAAGAACACGACGCCGTTTCTCGTCCC
CGCCATGAAGAACGTTTACAACTCCTTGGTTAAGTACAAGCTTGATTCTA
ACGTTAAAGTCTCCTCTCCTATTGCTTTAGGTGCGTTACAAAATTCGTAC
CCGCCATCTTCCGGGTCGTTCAAATCGGATCTCATCGAGCCCGCTTTGAA
ACCCATGTTGGAGTTTCTACGTAAGACGTCGTCGTATCTCATGGTTAATG
CGTATCCTTTTTTCGCCTACTCTGCTAACGCGGATAAGATATCTTTAGAC
TACGCTTTGT
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