CN192483

Overview
NameCN192483
Unique NameCN192483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8876 contig Csv1_Contig8876:880..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN192483 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 2.887e-87
Identity = 171/247 (69.23%), Postives = 196/247 (79.35%), Query Frame = 2 
Query:   23 QAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKGGYFDPENASSSHCEASDQPEIHLKSEGASCSDESSGNGLGKGIASFLVDASDLANFLTMDRHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELL 763
            +AEPL+A+L + P+ +DS+ C + ++ + CA    FD    S+S  E + +       + A  SDE SG    KGI  FL+DASDLANFLT DR  GF C  Q LLRSVLAEK EL FSVVSLLW+KLIAAPE QP+AESTSAQQGWRQVVDALCNVVSA+P KAA AVVLQAERELQPWIAKDD++GQKMW+INQRIVK++VELMR +D PESLVILASASDLLLRATDGMLVDGEACTLPQLELL
Sbjct:  797 KAEPLEAYLKNTPVQKDSVTCLNWKQENTCASTTCFDTAVTSASRTEMNPRGN----HKYARHSDEGSGRPSEKGIKDFLLDASDLANFLTADRLAGFYCGTQKLLRSVLAEKPELSFSVVSLLWHKLIAAPEIQPTAESTSAQQGWRQVVDALCNVVSATPAKAAAAVVLQAERELQPWIAKDDEEGQKMWKINQRIVKVLVELMRNHDRPESLVILASASDLLLRATDGMLVDGEACTLPQLELL 1039
[Close]
BLAST of CN192483 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 1.436e-78
Identity = 160/247 (64.78%), Postives = 192/247 (77.73%), Query Frame = 2 
Query:   23 QAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKGGYFDPENASSSHCEASDQPEIHLKSEGASCSDESSGNGLGKGIASFLVDASDLANFLTMDRHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELL 763
            +AEPL+AHL   P+ +D     +  K    + GG  + ++AS SH +      +   +E    + + +    GK IAS  V+ASDLANFLTMDR+ G+  S Q LLRSVL+EKQELCFSVVSLLW KLIA+PE Q SAESTSA QGWR+VVDALC++VSASPTKA+ A+VLQAE++LQPWIA+DD+QGQKMWR+NQRIVKLI ELMR +DSPE+LVILASASDLLLRATDGMLVDGEACTLPQLELL
Sbjct:  788 KAEPLEAHLTLTPVKKDEPPIEE--KNINSSDGGALEKKDASRSHRKNGFARPLLKCAEDVILNGDVASTS-GKAIASLQVEASDLANFLTMDRNGGYRGS-QTLLRSVLSEKQELCFSVVSLLWQKLIASPEMQMSAESTSAHQGWRKVVDALCDIVSASPTKASAAIVLQAEKDLQPWIARDDEQGQKMWRVNQRIVKLIAELMRNHDSPEALVILASASDLLLRATDGMLVDGEACTLPQLELL 1030
The following BLAST results are available for this feature:
BLAST of CN192483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH2.887e-8769.23Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ1.436e-7864.78Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006P13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192483 ID=CN192483; Name=CN192483; organism=Citrus sinensis; type=EST; length=764bp
AAGCTGTTGCATCGATTGTTAACAGGCTGAGCCATTGAAAGCACACTTAA
TGCATGCACCTATTTGGAGGGACTCCATTGCATGTTCTGATGGCCAAAAA
CTACATAAATGTGCGAAGGGTGGCTACTTCGATCCAGAGAATGCATCTTC
ATCACATTGTGAAGCTTCAGACCAACCAGAAATTCATCTTAAAAGTGAAG
GAGCTTCATGCTCGGATGAAAGCTCAGGAAATGGTTTGGGTAAAGGCATT
GCAAGTTTCCTAGTGGATGCTTCAGATTTAGCCAATTTCCTCACTATGGA
CAGGCATATAGGATTCAATTGTAGTGCACAATTTCTTTTAAGATCAGTAC
TTGCAGAGAAACAAGAATTGTGCTTCTCTGTTGTTTCACTACTATGGAAC
AAGTTGATTGCAGCCCCAGAAACCCAACCGAGTGCTGAAAGCACTTCTGC
CCAACAAGGGTGGCGACAGGTGGTTGACGCACTGTGCAATGTTGTCTCGG
CATCACCCACGAAAGCGGCTACAGCTGTTGTTCTTCAGGCGGAAAGGGAA
TTGCAACCTTGGATAGCCAAAGATGATGATCAGGGTCAGAAGATGTGGAG
AATCAACCAGCGGATTGTAAAACTTATTGTGGAGCTGATGAGAATTTATG
ACAGTCCAGAGTCACTGGTAATATTGGCAAGCGCATCAGACCTGCTTCTA
CGTGCCACAGACGGGATGCTTGTTGATGGTGAAGCTTGCACACTGCCACA
ACTTGAGTTACTGG
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