EY660344

Overview
NameEY660344
Unique NameEY660344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660344 vs. ExPASy Swiss-Prot
Match: NUD20_ARATH (Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.301e-49
Identity = 93/159 (58.49%), Postives = 116/159 (72.96%), Query Frame = 2
Query:    8 CNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGL 478
            CNRGSE   EF PF+IE+Q+ GY H RF  +LR++ D+F +S N     R   +V LN  L+  ++RTR V +VIK L ++ +IP I+NELYPV  +F +P+FFSL+RAAAPYFGIK Y V +NGYVE+DGQK LWIGKRS  KSTYPGMLD L  GGL
Sbjct:   88 CNRGSEKLGEFIPFVIEEQIVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKLLWIGKRSLSKSTYPGMLDHLVAGGL 246          
BLAST of EY660344 vs. ExPASy Swiss-Prot
Match: NUD24_ARATH (Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.203e-48
Identity = 90/157 (57.32%), Postives = 112/157 (71.34%), Query Frame = 2
Query:    8 CNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGL 478
            CNRG E   EF PF+IE+Q+ GY H  F  +LR ++D+F +S     ++G HV LN  L   +ERTR V  VIK L  + +IP I+NELYPV  +F +P FFS++RAAAPYFG+K YA+ +NGYVE+DGQKFLWIGKRS  KSTYPG LD L  GGL
Sbjct:   86 CNRGLEKLGEFIPFVIEEQIVGYIHKGFTKYLRDFNDIFTFS-----QYGGHVTLNMMLDKPEERTRAVAHVIKILGNKGIIPGIRNELYPVKPSFNAPAFFSIERAAAPYFGLKGYAIHVNGYVERDGQKFLWIGKRSLAKSTYPGKLDHLVAGGL 237          
The following BLAST results are available for this feature:
BLAST of EY660344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NUD20_ARATH1.301e-4958.49Nudix hydrolase 20, chloroplastic OS=Arabidopsis t... [more]
NUD24_ARATH3.203e-4857.32Nudix hydrolase 24, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660344 ID=EY660344; Name=EY660344; organism=Citrus sinensis; type=EST; length=735bp
CAAAATCTGCAATCGTGGCTCAGAAATGCAATCCGAGTTTTTTCCTTTTA
TCATCGAGGACCAAGTTGCTGGTTACACACATAATCGTTTCGCTAGTCAC
CTAAGGAAATACGACGACGTATTCATTTACTCTGGGAACAACGGAGGTCG
ATTTGGCAGTCACGTGAAGTTAAACTCAAAGCTGAAAACAGCCGATGAGA
GGACGAGAGTTGTTGGAGAAGTGATTAAATGCTTGGCCGAAGAAGAATTG
ATTCCAGATATACAAAATGAGCTCTATCCTGTAGCGTCAACCTTTGGTTC
TCCGATCTTCTTCTCGCTGGATCGTGCCGCTGCTCCTTACTTTGGGATAA
AGGCTTATGCAGTTCCCTTGAATGGTTATGTTGAAAAAGATGGGCAAAAA
TTTCTGTGGATTGGAAAACGAAGTCAAGTCAAATCTACTTATCCAGGAAT
GCTTGATATTCTAGCTGGTGGAGGATTGGTTTGTAATAGTAACCTTTCAT
TGCTTTTCTTAGGTTTATAGTATTGGATTCTTCTTTTGAATTGTATTGAG
TTTATTTTAGTTTCGAAAAACACTAAAGTTGTCAGCTGATTCTCCCAAGT
CCTTTTTGTGATCGGACAAAAGTGCCAAACATGTATTGCATTGGTAGGGC
ACAGCTGGATCCTCATATNACTTGAATTCACTGATGACCTTCATTTGAAA
TTGGAATANGTTGCTTACTAAAAAAAAAAAAAAAA
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