CX043560

Overview
NameCX043560
Unique NameCX043560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4228 contig Csv1_Contig4228:66..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043560 vs. ExPASy Swiss-Prot
Match: HM13_MOUSE (Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.518e-19
Identity = 53/150 (35.33%), Postives = 77/150 (51.33%), Query Frame = 1
Query:  355 LSNEHAMRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE---DLIIWHFPYFRSLEI---EFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYD 786
            +++  A RFP + S               + +N +L+ YFFVLGI+ALS TI P + +F P ++      L+          EI   EF    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+YD
Sbjct:   70 ITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYD 219          
BLAST of CX043560 vs. ExPASy Swiss-Prot
Match: HM13_HUMAN (Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.595e-19
Identity = 53/150 (35.33%), Postives = 76/150 (50.67%), Query Frame = 1
Query:  355 LSNEHAMRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE---DLIIWHFPYFRSLEI---EFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYD 786
            +++  A RFP + S               + +N +L+ YFFVLGI+ALS TI P + +F P  +      L+          EI   EF    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+YD
Sbjct:   70 ITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYD 219          
The following BLAST results are available for this feature:
BLAST of CX043560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HM13_MOUSE3.518e-1935.33Minor histocompatibility antigen H13 OS=Mus muscul... [more]
HM13_HUMAN4.595e-1935.33Minor histocompatibility antigen H13 OS=Homo sapie... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11H08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11H08-O15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043560 ID=CX043560; Name=CX043560; organism=Citrus sinensis; type=EST; length=788bp
CCTCGAGCTTTGTCTCCGATCTGAATGTTTAGCGACCGTTAAGAGAGAGA
AGGGAAAAAAAAAAAGAAGAGACTTGACTGACAGATCCTTTTTTAATCTT
TCTCTTCGTATCAGGTTGCGAGGGTTTTCGGTTCTGTGAATTTCGTTGAT
TCGGCCGCTGAATTGATTGAATAAAGCCAGAAAAAAAAAAACAATGAAGA
ATTGTGAACGGATAGCGAATTTGGCTTTAGCAGGTTTAACATTGGCACCG
CTTCTTGTGAAGGTAGATCCAAACTTAAATGTTATATTGACAGCATGTCT
CACAGTTTATGTGGGCTGCTATCGATCTGTCAAACCAACTCCACCATCAG
AGATCTGTCTAATGAACATGCCATGCGCTTTCCTTTTGTTGGAAGTGCTA
TGTTGTTATCACTGTTCTTACTTTTCAAGTTTCTATCTAAAGACCTGGTC
AACGCTGTATTGACCTGCTACTTCTTCGTTCTTGGGATCATTGCCCTTTC
GGCGACTATCTTACCAGCTGTGAAACGCTTCTTGCCAAACCATTGGAATG
AGGACCTAATTATATGGCATTTCCCTTATTTCCGTTCTTTGGAGATTGAG
TTCACAAGGTCTCAGATCATTGCTGCAATCCCTGGGACGTTTTTTTGTGC
ATGGTATGCTTCACAGAAACATTGGCTAGCTAACAATACCTTGGGCCTTG
CCTTCTGCATTCAGGGAATTGAAATGCTTTCTCTTGGATCTTTCAAGACT
GGTGCCATTCTTTTGGCTGGACTTTTTGTATATGATAT
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