CN191756

Overview
NameCN191756
Unique NameCN191756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length284
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191756 vs. ExPASy Swiss-Prot
Match: AAT1_MEDSA (Aspartate aminotransferase 1 OS=Medicago sativa GN=AAT-1 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.914e-17
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 3
Query:  147 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKP 284
            S+SVF  +VRAPEDPILGVTVAYNKD SP+KLNLGVGAYRTEEGKP
Sbjct:   14 SDSVFAHLVRAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTEEGKP 59          
BLAST of CN191756 vs. ExPASy Swiss-Prot
Match: AAT3_ARATH (Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.644e-16
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 3
Query:  153 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKP 284
            SVF  +V+APEDPILGVTVAYNKD SPVKLNLGVGAYRTEEGKP
Sbjct:   47 SVFSHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKP 90          
BLAST of CN191756 vs. ExPASy Swiss-Prot
Match: AATC_ORYSJ (Aspartate aminotransferase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os01g0760600 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.983e-16
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 3
Query:  141 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKP 284
            M S SVF  + +APEDPILGVTVAYNKD SPVK+NLGVGAYRTEEGKP
Sbjct:    1 MASSSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKP 48          
BLAST of CN191756 vs. ExPASy Swiss-Prot
Match: AAT2_ARATH (Aspartate aminotransferase, cytoplasmic isozyme 1 OS=Arabidopsis thaliana GN=ASP2 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.703e-15
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  150 ESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKP 284
            +SVF  + RAPEDPILGVTVAYN D SPVK+NLGVGAYRTEEGKP
Sbjct:    2 DSVFSNVARAPEDPILGVTVAYNNDPSPVKINLGVGAYRTEEGKP 46          
BLAST of CN191756 vs. ExPASy Swiss-Prot
Match: AATC_DAUCA (Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.794e-15
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 3
Query:  153 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKP 284
            SVF  +VRAPEDPILGVTVAY+KD SP KLNLGVGAYRTEEGKP
Sbjct:    3 SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKP 46          
BLAST of CN191756 vs. ExPASy Swiss-Prot
Match: AATM_DICDI (Aspartate aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=aatA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 3
Query:  132 RNLMDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKP 284
            R    + + +  + + PEDPILGV++AYNKDTSP K+NLGVGAYR E GKP
Sbjct:   19 RQFSTNTNWWANVQKGPEDPILGVSIAYNKDTSPSKINLGVGAYRDENGKP 69          
The following BLAST results are available for this feature:
BLAST of CN191756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AAT1_MEDSA6.914e-1786.96Aspartate aminotransferase 1 OS=Medicago sativa GN... [more]
AAT3_ARATH7.644e-1688.64Aspartate aminotransferase, chloroplastic OS=Arabi... [more]
AATC_ORYSJ9.983e-1681.25Aspartate aminotransferase, cytoplasmic OS=Oryza s... [more]
AAT2_ARATH1.703e-1582.22Aspartate aminotransferase, cytoplasmic isozyme 1 ... [more]
AATC_DAUCA3.794e-1586.36Aspartate aminotransferase, cytoplasmic OS=Daucus ... [more]
AATM_DICDI1.492e-1158.82Aspartate aminotransferase, mitochondrial OS=Dicty... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0005M07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191756 ID=CN191756; Name=CN191756; organism=Citrus sinensis; type=EST; length=284bp
CCCGGGCCGCAGGCCGCCTACAGTTAAACTAACCAAACCACTCCGAGGCC
AATACTATATTAAACCCAAACATAATTTTCTCTTCACATTTTTTTCCCCC
ACAAACTCTCTCATTTCATTGATTTCTTGAAAGAAATTTAATGGATTCTG
AATCAGTGTTTGGAAAGATTGTTCGTGCTCCTGAAGATCCCATTCTAGGG
GTCACTGTTGCTTATAACAAGGATACAAGCCCAGTCAAGTTGAACTTGGG
TGTTGGTGCTTACCGAACTGAGGAAGGGAAACCT
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