CN191733

Overview
NameCN191733
Unique NameCN191733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8362 contig Csv1_Contig8362:28..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN191733 vs. ExPASy Swiss-Prot
Match: DHQSD_ARATH (Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.983e-71
Identity = 138/199 (69.35%), Postives = 163/199 (81.91%), Query Frame = 3
Query:  129 TMESPNLLVASGS---KLVSGSMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENKRVDVLRLAMELGADYIDVELQVAREFNDSVRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVP 716
            +ME  N+ VAS S   ++ S  + KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRLD LK+FNP E++KT+IK+SP+PTLFTYRP WEGGQY+GDEN+R DVLRLAMELGADYIDVELQVA EF  S+ GKKP K KVIVSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+DI DVAR+F IT  +QVP
Sbjct:   67 SMEPSNVYVASNSTEMEIGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVP 265          
BLAST of CN191733 vs. ExPASy Swiss-Prot
Match: AROD_METTH (3-dehydroquinate dehydratase OS=Methanobacterium thermoautotrophicum GN=aroD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 64/166 (38.55%), Postives = 98/166 (59.04%), Query Frame = 3
Query:  201 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRE-NIKTLIKESPVPTLFTYRPIWEGGQYDGDENKRVDVLRLAMELGADYIDVELQVAREFNDSVRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQI 695
            T ICVP+  ++  ++    G+A  +GAD++EIR+DGL+  NP E NI+ LI++   P + T R   EGG + G E++R+ +L  A E+ AD++D+EL  ARE  + V G      + IVS HN++ TPS+E L  +V   +  G DI K A    ++ D   V Q+
Sbjct:    3 TKICVPVFEKTAPEVTESAGRAIDAGADILEIRIDGLQ--NPGEVNIRELIEDIGFPVIATNRSPVEGGHFSGSEDERIKLLMAAAEV-ADFVDIELSSAREDIERVTGSAR---RSIVSYHNFRETPSLEALLRIVRMAKEMG-DIAKVAVMPENLADTLVVLQL 161          
BLAST of CN191733 vs. ExPASy Swiss-Prot
Match: AROD_META3 (3-dehydroquinate dehydratase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=aroD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 57/167 (34.13%), Postives = 99/167 (59.28%), Query Frame = 3
Query:  204 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENKRVDVLRLAMELGADYIDVELQVAREFNDSV---RGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQI 695
            +IC+P++ ++++  +    +A    AD+VE R D L++ + ++    + K +  P++ T R  WEGG+Y GD NKR+++ + A+E    +ID+EL+   E N  +   R K   K K+IVS H+++ TPS +DL  +V +    G DI KFAT A +  D+ ++F +
Sbjct:    1 MICIPVIDKNINDALKSAEEA-LKVADIVEFRADLLESVDKQD----IEKMAKYPSIITIRADWEGGEYTGDNNKRIELYKTAIENNVKFIDIELK--EEKNKELVEFRNKIGSKTKIIVSYHDFEKTPSKQDLMEIVEKELKIG-DIAKFATMAQNKNDLLKIFAV 159          
BLAST of CN191733 vs. ExPASy Swiss-Prot
Match: AROD_METVS (3-dehydroquinate dehydratase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=aroD PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 56/165 (33.94%), Postives = 96/165 (58.18%), Query Frame = 3
Query:  204 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENKRVDVLRLAMELGADYIDVELQVAREFN-DSVRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQI 695
            +IC+PI+  +V+K ++   +A   G D+VE RLD L N    +    + K + +P++ T R  WEGG +    NKR++ L+ A++ GA +IDVEL+  +     + R +   K K+IVS H+++ TP + +L ++V +    G DI KFAT +    DV ++ ++
Sbjct:    1 MICIPIIDNTVEKALISAKEALKYG-DIVEFRLDLLDNLTKFD----IEKFAKIPSIITIRANWEGGAWKESNNKRIEFLKHAIKHGAKFIDVELKEEKNLELVTYRNEIGSKTKIIVSYHDFEKTPEINELIDVVEKELKIG-DIAKFATFSNSKKDVLKILEV 159          
BLAST of CN191733 vs. ExPASy Swiss-Prot
Match: AROD_DESPS (3-dehydroquinate dehydratase OS=Desulfotalea psychrophila GN=aroD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  276 GADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENKRVDVLRLAMELGADYIDVELQVAREFNDSVRGKKPEK-CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQI 695
            GAD++E+RLD    +     I   ++      LFT RP WEGG + G E  R+ +L  A+  GA YID+EL+ A E +  +R    E+  ++I+S H+++ T ++  L+ ++ ++Q +GADI K  TTA    DV RVFQ+
Sbjct:   27 GADVIEVRLD----YIDVPEIDPFVESLATDLLFTCRPTWEGGLFAGTEEDRLALLAEAVRAGAAYIDLELRSAEESHQYLRTYLAERETELILSYHDFESTATLAKLTGIIDQMQDAGADIGKLITTANSAADVVRVFQV 163          
BLAST of CN191733 vs. ExPASy Swiss-Prot
Match: AROD_METJA (3-dehydroquinate dehydratase OS=Methanocaldococcus jannaschii GN=aroD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 56/169 (33.14%), Postives = 96/169 (56.80%), Query Frame = 3
Query:  204 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENKRVDVLRLAMELGADYIDVELQVAR-----EFNDSVRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQI 695
            +IC+P++ +SV+K +    K     AD+VE R+D LK  +  E+I+   K    P + T R  WEGG + G+  +R+++++ A+E  A ++D+EL+  +     +F D +      K K+I+S H+++ TPS E L  +V +  + G DI KFAT A    DV  + ++
Sbjct:    1 MICLPVVEDSVEKAIKTAEKY-LEIADIVEFRIDMLKEVS-EEDIEKFAK---YPCIITVRADWEGGYWKGNNEERLNLIKKAIECNAKFVDIELREEKNKELVKFRDEI----GSKTKIIISYHDFEKTPSKEKLVEIVEKALSIG-DIAKFATMANSKEDVLNILEV 159          
BLAST of CN191733 vs. ExPASy Swiss-Prot
Match: AROD_METM6 (3-dehydroquinate dehydratase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=aroD PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 52/165 (31.52%), Postives = 93/165 (56.36%), Query Frame = 3
Query:  204 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENKRVDVLRLAMELGADYIDVELQVAREFN-DSVRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQI 695
            +IC+P++ E+V   +    +A   G D+VE R+D L +       + + K S +P++ T R  WEGG +   +N+R+++L+ A++  A +ID+EL+  R       R +   K K+IVS H+++ TP +++L ++V +    G DI KFAT A    D  ++  +
Sbjct:    1 MICIPVIDENVSDAINSAKEALKYG-DIVEFRVDLLNDVT----FEDIEKFSKIPSILTIRAEWEGGAWKKSDNERIELLKYAIKNNAKFIDIELKEERNLELVKYRNEIGSKTKIIVSYHDFEKTPEIDELIDVVEKELKIG-DIAKFATFAHSKEDTLKILNL 159          
BLAST of CN191733 vs. ExPASy Swiss-Prot
Match: AROD_METMA (3-dehydroquinate dehydratase OS=Methanosarcina mazei GN=aroD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 54/162 (33.33%), Postives = 91/162 (56.17%), Query Frame = 3
Query:  234 VDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENKRVDVL--RLAMELGADYIDVELQVA-REFNDSVRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITV 701
            ++K + +  KA   GAD++EIRLD L    P    E I+ +  E+ +P + T R   EGG++DG E  R  +L   L+++ G D ID+EL    +E N  ++  K  +  VIVSSH++  TP ++++  ++  +  +GADI K A   L + D   + ++T+
Sbjct:   20 LEKPLENSKKAAEKGADILEIRLDLLGIRTPERAAEVIREIKAETGIPIIVTSRSGAEGGKWDGKEEDRTGLLINLLSLKDGPDAIDIELSAGMKERNRVIKAAKDRETAVIVSSHDFLKTPPLQNMRTIIEEMFLAGADIAKLAVMPLSVGDTLNLLRVTL 181          
BLAST of CN191733 vs. ExPASy Swiss-Prot
Match: AROD_METBF (3-dehydroquinate dehydratase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=aroD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 52/156 (33.33%), Postives = 89/156 (57.05%), Query Frame = 3
Query:  261 KANASGADLVEIRLD--GLKNFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENKRVDVLR--LAMELGADYIDVELQVAREFNDSV-RGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ 710
            KA   GADL+EIRLD  G+++     E I+ +  E+ +P + T R I EGG+++G E  R+++L   ++++ G D +D+EL   RE  D V +  K     VIVSSH++  TP+ +++  ++     +GADI K A       DV  + ++ + ++
Sbjct:   29 KAAKMGADLLEIRLDLLGIRDLETAAETIRKVKSETGLPVILTNRSITEGGKWEGKEADRIELLTNLISLKDGPDAVDIELSAGREARDQVIKAAKAHGKTVIVSSHDFSRTPAFQEMKTILEEAFLAGADIAKLAVMPQSRRDVLNLLRVALDAR 184          
BLAST of CN191733 vs. ExPASy Swiss-Prot
Match: AROD_METAC (3-dehydroquinate dehydratase OS=Methanosarcina acetivorans GN=aroD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 54/162 (33.33%), Postives = 92/162 (56.79%), Query Frame = 3
Query:  234 VDKMVVDMGKANASGADLVEIRLDGLKNFNPREN---IKTLIKESPVPTLFTYRPIWEGGQYDGDENKRVDVL--RLAMELGADYIDVELQVAREFNDSV-RGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITV 701
            ++K +    KA   GAD++E+RLD L   NP      I+ +  E+ +P L T R + EGG+++G E  R ++L   L+++ G D +D+EL  +RE  D V +  K     VI+SSH++  TPS ++++  +A +  + ADI K A     + DV  + ++T+
Sbjct:   20 LEKPLETSKKAAEKGADILEVRLDLLGIRNPESAAKIIREIKSETGLPVLVTNRSVAEGGKWEGKEVDRTELLVALLSLKDGPDAVDIELSASREDRDKVIKAAKAHGKTVIISSHDFSKTPSPQEMTATLAEMFLAEADIAKIAVMPGSMEDVLNLLKVTL 181          
The following BLAST results are available for this feature:
BLAST of CN191733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
DHQSD_ARATH1.983e-7169.35Bifunctional 3-dehydroquinate dehydratase/shikimat... [more]
AROD_METTH7.151e-2138.553-dehydroquinate dehydratase OS=Methanobacterium t... [more]
AROD_META37.906e-2034.133-dehydroquinate dehydratase OS=Methanococcus aeol... [more]
AROD_METVS6.693e-1933.943-dehydroquinate dehydratase OS=Methanococcus vann... [more]
AROD_DESPS1.947e-1837.593-dehydroquinate dehydratase OS=Desulfotalea psych... [more]
AROD_METJA1.262e-1733.143-dehydroquinate dehydratase OS=Methanocaldococcus... [more]
AROD_METM64.796e-1731.523-dehydroquinate dehydratase OS=Methanococcus mari... [more]
AROD_METMA8.182e-1733.333-dehydroquinate dehydratase OS=Methanosarcina maz... [more]
AROD_METBF8.182e-1733.333-dehydroquinate dehydratase OS=Methanosarcina bar... [more]
AROD_METAC1.396e-1633.333-dehydroquinate dehydratase OS=Methanosarcina ace... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191733 ID=CN191733; Name=CN191733; organism=Citrus sinensis; type=EST; length=721bp
GAGGCACCCACCAACCCCCGCCTCGCCTACCTTCTCTTGCTTGCTGACTT
AAGATTGACCAAACTCTGTTATTCTTCTTCATCAAACTCATAACTCAAAA
CTCTCAAGCTCAAGTCACTCACTTTTTCACCATGGAATCTCCCAACCTTT
TGGTTGCTTCTGGCTCAAAACTTGTAAGTGGAAGTATGAGGAAGAATCCA
ACCCTAATTTGCGTTCCTATAATGGGGGAATCAGTGGATAAGATGGTGGT
TGATATGGGTAAGGCAAATGCTAGTGGTGCTGATCTTGTCGAAATTCGTT
TAGATGGTTTGAAGAATTTTAATCCTCGTGAGAATATCAAAACTCTGATT
AAAGAATCCCCTGTGCCCACCTTGTTCACGTACAGACCGATTTGGGAGGG
TGGTCAATATGATGGTGATGAAAACAAGCGAGTGGATGTACTTCGGTTGG
CCATGGAGTTGGGAGCTGATTACATTGATGTTGAGCTTCAGGTTGCTCGT
GAGTTCAATGATTCTGTACGTGGAAAGAAACCTGAAAAGTGCAAAGTCAT
AGTTTCTTCTCACAACTATCAGTATACTCCGTCTGTGGAAGATCTCAGCA
ATCTTGTGGCAAGGATACAAGCATCTGGAGCTGATATAGTTAAGTTTGCG
ACGACTGCATTGGACATTACTGATGTGGCACGCGTTTTCCAAATAACTGT
GCATTCTCAAGTTCCAATAAT
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