CN191731

Overview
NameCN191731
Unique NameCN191731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length235
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN191731_ssr24 microsatellite CN191731_ssr24:24..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8502 contig Csv1_Contig8502:119..353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK2_SOLLC (Fructokinase-2 OS=Solanum lycopersicum GN=FRK2 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.088e-17
Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 3
Query:   66 MATNGAVXXXXXLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            MA NGA      LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAV R
Sbjct:    1 MAVNGA--SSSGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVTR 54          
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK2_SOLHA (Fructokinase-2 OS=Solanum habrochaites GN=FRK2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.088e-17
Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 3
Query:   66 MATNGAVXXXXXLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            MA NGA      LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAV R
Sbjct:    1 MAVNGA--SSSGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVTR 54          
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK_SOLTU (Fructokinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.856e-17
Identity = 47/56 (83.93%), Postives = 48/56 (85.71%), Query Frame = 3
Query:   66 MATNGAVXXXXXLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            MA NG+      LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAV R
Sbjct:    1 MAVNGSALSSG-LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVTR 55          
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK1_ARATH (Probable fructokinase-1 OS=Arabidopsis thaliana GN=At2g31390 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.203e-16
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 3
Query:   66 MATNGAVXXXXXLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            MA+NG       LIVSFGEMLIDFVPT SGVSLAEAPGFLKAPGGAPANVAIAV+R
Sbjct:    1 MASNG----DKGLIVSFGEMLIDFVPTESGVSLAEAPGFLKAPGGAPANVAIAVSR 52          
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK4_ARATH (Probable fructokinase-4 OS=Arabidopsis thaliana GN=At3g59480 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.501e-16
Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 3
Query:  102 LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            LIVSFGEMLIDFVPTVSGVSLA+APGF+KAPGGAPANVAIA++R
Sbjct:   10 LIVSFGEMLIDFVPTVSGVSLADAPGFIKAPGGAPANVAIAISR 53          
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK3_ARATH (Probable fructokinase-3 OS=Arabidopsis thaliana GN=At1g06020 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.501e-16
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 3
Query:  102 LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            LIVSFGEMLIDFVPTVSGVSL+E+PGFLKAPGGAPANVAIAV+R
Sbjct:   10 LIVSFGEMLIDFVPTVSGVSLSESPGFLKAPGGAPANVAIAVSR 53          
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK1_ORYSJ (Fructokinase-1 OS=Oryza sativa subsp. japonica GN=FRK1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.019e-15
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 3
Query:  102 LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            L+VSFGEMLIDFVPTV+GVSLAEAP F+KAPGGAPANVAIAVAR
Sbjct:    7 LVVSFGEMLIDFVPTVAGVSLAEAPAFVKAPGGAPANVAIAVAR 50          
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK1_ORYSI (Fructokinase-1 OS=Oryza sativa subsp. indica GN=FRK1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.019e-15
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 3
Query:  102 LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            L+VSFGEMLIDFVPTV+GVSLAEAP F+KAPGGAPANVAIAVAR
Sbjct:    7 LVVSFGEMLIDFVPTVAGVSLAEAPAFVKAPGGAPANVAIAVAR 50          
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK1_MAIZE (Fructokinase-1 OS=Zea mays GN=FRK1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.019e-15
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 3
Query:  102 LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            L+VSFGEMLIDFVPTV+GVSLAEAP FLKAPGGAPANVAIAV+R
Sbjct:    7 LVVSFGEMLIDFVPTVAGVSLAEAPAFLKAPGGAPANVAIAVSR 50          
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK2_ARATH (Probable fructokinase-2 OS=Arabidopsis thaliana GN=At1g06030 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.921e-14
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 3
Query:  102 LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            L+VSFGEMLIDFVPT SGVSL+E+ GFLKAPGGAPANVAIAV+R
Sbjct:   11 LVVSFGEMLIDFVPTESGVSLSESSGFLKAPGGAPANVAIAVSR 54          
The following BLAST results are available for this feature:
BLAST of CN191731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SCRK2_SOLLC1.088e-1785.71Fructokinase-2 OS=Solanum lycopersicum GN=FRK2 PE=... [more]
SCRK2_SOLHA1.088e-1785.71Fructokinase-2 OS=Solanum habrochaites GN=FRK2 PE=... [more]
SCRK_SOLTU1.856e-1783.93Fructokinase OS=Solanum tuberosum PE=2 SV=1[more]
SCRK1_ARATH1.203e-1682.14Probable fructokinase-1 OS=Arabidopsis thaliana GN... [more]
SCRK4_ARATH3.501e-1690.91Probable fructokinase-4 OS=Arabidopsis thaliana GN... [more]
SCRK3_ARATH3.501e-1693.18Probable fructokinase-3 OS=Arabidopsis thaliana GN... [more]
SCRK1_ORYSJ1.019e-1590.91Fructokinase-1 OS=Oryza sativa subsp. japonica GN=... [more]
SCRK1_ORYSI1.019e-1590.91Fructokinase-1 OS=Oryza sativa subsp. indica GN=FR... [more]
SCRK1_MAIZE1.019e-1590.91Fructokinase-1 OS=Zea mays GN=FRK1 PE=1 SV=1[more]
SCRK2_ARATH1.921e-1486.36Probable fructokinase-2 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191731 ID=CN191731; Name=CN191731; organism=Citrus sinensis; type=EST; length=235bp
GCACGAAGGTTTCTCTTCATAAACTCTCTCTCTATTCAATACACAACGTT
TCGATTTTTGTACAAATGGCTACAAACGGCGCCGTTTCATCCTCCTCAAG
CCTGATCGTGTCCTTCGGCGAGATGCTCATAGACTTCGTCCCGACGGTCT
CCGGCGTCTCCCTCGCCGAGGCCCCTGGATTCCTCAAGGCCCCCGGCGGC
GCCCCCGCCAACGTCGCCATAGCTGTAGCTCGCCT
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