GR312998

Overview
NameGR312998
Unique NameGR312998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3699 contig Csv1_Contig3699:296..481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312998 vs. ExPASy Swiss-Prot
Match: BAMT_ANTMA (Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.609e-13
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = -2
Query:    3 LNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFYGRLFPTNSLQLAHSSYGVHWLSK 185
            LNDLP NDFN LFK LS     + + + F+ G PGSFYGRL P  SL  A+SSY +HWLS+
Sbjct:   99 LNDLPDNDFNNLFKLLS-----HENGNCFVYGLPGSFYGRLLPKKSLHFAYSSYSIHWLSQ 154          
BLAST of GR312998 vs. ExPASy Swiss-Prot
Match: JMT_ARATH (Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.483e-11
Identity = 35/73 (47.95%), Postives = 40/73 (54.79%), Query Frame = -2
Query:    3 LNDLPGNDFNTLFKGLSSFADRYND------------ASLFMMGAPGSFYGRLFPTNSLQLAHSSYGVHWLSK 185
            LNDLP NDFN +   L  F DR N+             S F+   PGSFYGRLFP  SL   HSS  +HWLS+
Sbjct:   95 LNDLPSNDFNYICASLPEFYDRVNNNKEGLGFGRGGGESCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQ 167          
BLAST of GR312998 vs. ExPASy Swiss-Prot
Match: MT810_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.314e-11
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = -2
Query:    3 NDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFYGRLFPTNSLQLAHSSYGVHWLSK 182
            ND P NDFNTLF+      +R      F +G PGSFYGR+ P NS+ + H+SY  HWLSK
Sbjct:  103 NDQPTNDFNTLFRTQPLSPER----EYFSVGVPGSFYGRVLPRNSIHIGHTSYTTHWLSK 158          
BLAST of GR312998 vs. ExPASy Swiss-Prot
Match: JMT_BRARP (Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.634e-11
Identity = 37/76 (48.68%), Postives = 41/76 (53.95%), Query Frame = -2
Query:    3 LNDLPGNDFNTLFKGLSSFADRY-----NDASL----------FMMGAPGSFYGRLFPTNSLQLAHSSYGVHWLSK 185
            LNDLP NDFN +F  L  F DR      N  SL          F+   PGSFYGRLFP  SL   HSS  +HWLS+
Sbjct:   95 LNDLPSNDFNYIFASLPEFYDRVKKRDNNYESLGFEHGSGGPCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQ 170          
BLAST of GR312998 vs. ExPASy Swiss-Prot
Match: MT797_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g37970 OS=Arabidopsis thaliana GN=At5g37970 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.358e-11
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = -2
Query:    6 NDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFYGRLFPTNSLQLAHSSYGVHWLS 182
            ND P NDFNTLF+    F+ +      F +G PGSF+GR+ P NSL + H+SY +HWLS
Sbjct:  106 NDQPNNDFNTLFRTQPFFSRK----EYFSVGVPGSFHGRVLPKNSLHIGHTSYTLHWLS 160          
The following BLAST results are available for this feature:
BLAST of GR312998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BAMT_ANTMA4.609e-1357.38Benzoate carboxyl methyltransferase OS=Antirrhinum... [more]
JMT_ARATH1.483e-1147.95Jasmonate O-methyltransferase OS=Arabidopsis thali... [more]
MT810_ARATH4.314e-1151.67Probable S-adenosylmethionine-dependent methyltran... [more]
JMT_BRARP5.634e-1148.68Jasmonate O-methyltransferase OS=Brassica rapa sub... [more]
MT797_ARATH7.358e-1150.85Probable S-adenosylmethionine-dependent methyltran... [more]
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Properties
Property NameValue
Genbank descriptionC06057C03 RindPdigS Citrus sinensis cDNA clone N16F02, mRNA sequence.