GR312993

Overview
NameGR312993
Unique NameGR312993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13855 contig Csv1_Contig13855:1..325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.268e-30
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 1
Query:    1 TVRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            TVRRQAVDVSPLRRVNQ+I+LLT GAREAS RN+KSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct:  142 TVRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 213          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.766e-29
Identity = 63/72 (87.50%), Postives = 71/72 (98.61%), Query Frame = 1
Query:    1 TVRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            TVRRQAVDVSPLRRVNQ+++L+TIGAREA+ RN+KSI+ECLAEE+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct:  132 TVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.766e-29
Identity = 63/72 (87.50%), Postives = 71/72 (98.61%), Query Frame = 1
Query:    1 TVRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            TVRRQAVDVSPLRRVNQ+++L+TIGAREA+ RN+KSI+ECLAEE+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct:  132 TVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.217e-28
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1
Query:    1 TVRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            TVRRQAVDV+PLRRVNQ+I LL  GAREAS RNIKSIAECLA+ELINAA+GSSNSYAIKKKDELERVAKSNR
Sbjct:  139 TVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 5.217e-28
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1
Query:    1 TVRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            TVRRQAVDVSPLRRVNQ+I LL  GAREA+ RNIK+IAECLA+ELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct:  133 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 122.865 bits (307), Expect = 5.217e-28
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1
Query:    1 TVRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            TVRRQAVDVSPLRRVNQ+I LL  GAREA+ RNIK+IAECLA+ELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct:  133 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 5.217e-28
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1
Query:    1 TVRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            TVRRQAVDVSPLRRVNQ+I LL  GAREA+ RNIK+IAECLA+ELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct:  133 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.217e-28
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1
Query:    1 TVRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            TVRRQAVDVSPLRRVNQ+I LL  GAREA+ RNIK+IAECLA+ELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct:  157 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.814e-28
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 1
Query:    4 VRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            VRRQAVD+SPLRRVNQ+I LLT GAREA+ RNIKSIAECLA+ELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:  127 VRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.162e-27
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 1
Query:    1 TVRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            TVRRQAVDVSPLRRVNQ+I L+  GAREA+ RNIK++AECLA+ELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct:  159 TVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230          
The following BLAST results are available for this feature:
BLAST of GR312993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS5_NEUCR4.268e-3093.0640S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5B_SCHPO2.766e-2987.5040S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO2.766e-2987.5040S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_PODCA5.217e-2888.8940S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]
RS5_MOUSE5.217e-2888.8940S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_HUMAN5.217e-2888.8940S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN5.217e-2888.8940S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5A_DROME5.217e-2888.8940S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_CICAR6.814e-2887.3240S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS5B_DROME1.162e-2786.1140S ribosomal protein S5b OS=Drosophila melanogast... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06057B08 RindPdigS Citrus sinensis cDNA clone N14B08, mRNA sequence.