GR312991

Overview
NameGR312991
Unique NameGR312991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10242 contig Csv1_Contig10242:648..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 1.514e-43
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHWIFWVGPF+GA LAAL
Sbjct:  186 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAAL 272          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.514e-43
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHWIFWVGPF+GA LAAL
Sbjct:  186 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAAL 272          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.514e-43
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHWIFWVGPF+GA LAAL
Sbjct:  185 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAAL 271          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.405e-43
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            TFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHW+FWVGPF+GA LAAL
Sbjct:  185 TFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAAL 271          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.405e-43
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            TFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHW+FWVGPF+GA LAAL
Sbjct:  185 TFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAAL 271          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.282e-42
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            TFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+NKD  WDDHW+FWVGPF+GA LAAL
Sbjct:  185 TFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAAL 271          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.186e-42
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            TF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  W+DHWIFWVGPFVGA LAA+
Sbjct:  188 TFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAI 274          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.361e-42
Identity = 78/87 (89.66%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            TF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN+D  W+DHWIFWVGPF+GA LAA+
Sbjct:  188 TFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAI 274          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 8.308e-42
Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            TF+LVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI++NK  GW+DHWIFWVGPF+GA LAAL
Sbjct:  189 TFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAAL 275          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.308e-42
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            TF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN+D  W DHWIFWVGPF+GA LAA+
Sbjct:  191 TFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAI 277          
The following BLAST results are available for this feature:
BLAST of GR312991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
PIP15_ARATH1.514e-4395.40Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP14_ARATH1.514e-4395.40Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH1.514e-4395.40Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP11_VICFA4.405e-4393.10Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH4.405e-4393.10Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP12_ARATH1.282e-4291.95Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_ORYSJ2.186e-4291.95Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_MAIZE6.361e-4289.66Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP2_PEA8.308e-4290.80Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP13_MAIZE8.308e-4289.66Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06057B05 RindPdigS Citrus sinensis cDNA clone N13F07, mRNA sequence.