GR312984

Overview
NameGR312984
Unique NameGR312984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2689 contig Csv1_Contig2689:612..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RK1_PEA (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum GN=RPL1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.673e-50
Identity = 97/107 (90.65%), Postives = 101/107 (94.39%), Query Frame = 1
Query:    1 TKFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKA 321
            TKF E  EAHFRLNIDPKYNDQQLRATVSLPKGTGK ++VAVL QGE+FDEAKNAGADLVGG+DLIEQIKGGFMEFDKLIASPDMM KVASLGKILGPRGLMPNPKA
Sbjct:   88 TKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKA 194          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.199e-48
Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 1
Query:    1 TKFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKA 321
            T+F E  EAHFRLNIDPKYNDQQLRATVSLPKGTG++V VAVLAQGEK DEAK+AGAD+VG DDLIEQIKGGFMEFDKLIASPDMMVKVA LGKILGPRGLMPNPKA
Sbjct:  144 TRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMPNPKA 250          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 6.577e-47
Identity = 90/107 (84.11%), Postives = 100/107 (93.46%), Query Frame = 1
Query:    1 TKFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKA 321
            TKF E AEAHFRLNIDPKYNDQQLRATVSLPKGTGK+V++AVLAQG+K DEAK AGAD+VGG++LIEQIKGGFM+FDKLIA+ DMM KVASLG+ILGPRGLMP PKA
Sbjct:  150 TKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKA 256          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.725e-37
Identity = 74/105 (70.48%), Postives = 87/105 (82.86%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E AEAH RL IDPKY DQQLR TVSLPKGTG+ V VAV+A+GEK  EA NAGAD+VG ++LIE+I  G M+F+ LIA+PDMM KVA LG++LGPRGLMP+PK
Sbjct:   38 KFNESAEAHIRLGIDPKYTDQQLRTTVSLPKGTGQEVRVAVIARGEKVQEANNAGADIVGSEELIEEIFKGMMDFEVLIATPDMMPKVAKLGRLLGPRGLMPSPK 142          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_SYNY3 (50S ribosomal protein L1 OS=Synechocystis sp. (strain PCC 6803) GN=rplA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.795e-36
Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E AEAH RL IDPKY+DQQ+R TVSLPKGTG++V VAVLA+GEK  EA +AGAD+ G ++LIE+I+ G M+FD LIA+PDMM K+A LGK LGPRGLMP+PK
Sbjct:   38 KFDETAEAHIRLGIDPKYSDQQIRTTVSLPKGTGQTVRVAVLARGEKVKEATDAGADIAGSEELIEEIQKGMMDFDVLIATPDMMPKIARLGKQLGPRGLMPSPK 142          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_PROMM (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.795e-36
Identity = 73/106 (68.87%), Postives = 86/106 (81.13%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKA 321
            KF E  EAH RL IDPKY DQQLR TV+LP+GTG+SV +AV+++GEK  EAK AGA+L G DDL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKA
Sbjct:   36 KFDETIEAHVRLGIDPKYTDQQLRTTVALPQGTGQSVRIAVISRGEKLAEAKTAGAELAGDDDLVESIGKGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKA 141          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.795e-36
Identity = 73/105 (69.52%), Postives = 86/105 (81.90%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E AEAH RL IDPKY DQQLR TVSLPKGTG++V VAV+ +GEK  EA NAGAD+VG ++LIE+I  G M+F+ LIA+PDMM KVA LG+ LGPRGLMP+PK
Sbjct:   37 KFDETAEAHIRLGIDPKYTDQQLRTTVSLPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKVAKLGRQLGPRGLMPSPK 141          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.795e-36
Identity = 73/105 (69.52%), Postives = 89/105 (84.76%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E AEAH RL IDPKY DQQLR TV+LPKGTG+ V VAV+A+GEK  EA NAGAD+VG ++LI++I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP+PK
Sbjct:   37 KFGEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDEIQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPK 141          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_PROM3 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplA PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.345e-36
Identity = 73/106 (68.87%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKA 321
            KF E  EAH RL IDPKY DQQLR TV+LP+GTG+SV +AV+ +GEK  EAK AGA+L G DDL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKA
Sbjct:   36 KFDETIEAHVRLGIDPKYTDQQLRTTVALPQGTGQSVRIAVITRGEKLAEAKTAGAELAGDDDLVESIGKGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKA 141          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_TRIEI (50S ribosomal protein L1 OS=Trichodesmium erythraeum (strain IMS101) GN=rplA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.062e-36
Identity = 71/105 (67.62%), Postives = 88/105 (83.81%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E AEAH RL IDPKY DQQLR TV+LPKGTG+++ +AV+A+GEK +EA  AGADL G ++LIEQI  G MEFD+LIA+PD+M +VA LG++LGPRGLMP+PK
Sbjct:   37 KFLEAAEAHVRLGIDPKYTDQQLRTTVALPKGTGQTIRIAVIAKGEKVNEALAAGADLAGSEELIEQISKGMMEFDRLIATPDVMPQVAKLGRLLGPRGLMPSPK 141          
The following BLAST results are available for this feature:
BLAST of GR312984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_PEA1.673e-5090.6550S ribosomal protein L1, chloroplastic (Fragment)... [more]
RK1_ARATH1.199e-4888.7950S ribosomal protein L1, chloroplastic OS=Arabido... [more]
RK1_SPIOL6.577e-4784.1150S ribosomal protein L1, chloroplastic OS=Spinaci... [more]
RL1_CYAP84.725e-3770.4850S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]
RL1_SYNY31.795e-3669.5250S ribosomal protein L1 OS=Synechocystis sp. (str... [more]
RL1_PROMM1.795e-3668.8750S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_MICAN1.795e-3669.5250S ribosomal protein L1 OS=Microcystis aeruginosa... [more]
RL1_ANASP1.795e-3669.5250S ribosomal protein L1 OS=Anabaena sp. (strain P... [more]
RL1_PROM32.345e-3668.8750S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_TRIEI3.062e-3667.6250S ribosomal protein L1 OS=Trichodesmium erythrae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06057A08 RindPdigS Citrus sinensis cDNA clone N08C11, mRNA sequence.