GR312983

Overview
NameGR312983
Unique NameGR312983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312983 vs. ExPASy Swiss-Prot
Match: PGLR_PENDI (Polygalacturonase OS=Penicillium digitatum GN=PG1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.609e-23
Identity = 57/74 (77.03%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    7 GSNIKFVXXXXXXXXXXXXXXXXLRDNNIVKDVTISDSTVINSDNGVRVKTIYQATGAVSGVTFSNIKLSNIAR 228
            GSNIKFV                LRDNNIVKDVTISDSTVINSDNGVRVKTIYQATGAVSGVTFSNIKLSNIA+
Sbjct:  214 GSNIKFVGGTCSGGHGISIGSVGLRDNNIVKDVTISDSTVINSDNGVRVKTIYQATGAVSGVTFSNIKLSNIAK 287          
BLAST of GR312983 vs. ExPASy Swiss-Prot
Match: PGLR1_PENOL (Polygalacturonase 1 OS=Penicillium olsonii GN=PG1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.288e-14
Identity = 37/50 (74.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:   79 RDNNIVKDVTISDSTVINSDNGVRVKTIYQATGAVSGVTFSNIKLSNIAR 228
            RD+N VK+VTISDSTV NSDNG+R+KTIY+A G V+ VTFSNI+LSNIA+
Sbjct:  241 RDDNTVKNVTISDSTVSNSDNGIRIKTIYKAKGEVADVTFSNIELSNIAK 290          
BLAST of GR312983 vs. ExPASy Swiss-Prot
Match: PGLRB_ASPFL (Polygalacturonase B OS=Aspergillus flavus GN=pecB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.249e-12
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    7 GSNIKFVXXXXXXXXXXXXXXXXLRDNNIVKDVTISDSTVINSDNGVRVKTIYQATGAVSGVTFSNIKLSNIAR 228
            G NI+F                  RD N VK+V ++DSTV++SDNG+R+KTI  ATG+VSGVT+ NI L NI +
Sbjct:  213 GENIEFTGATCSGGHGISIGSIGNRDTNTVKNVKVADSTVVDSDNGIRIKTISGATGSVSGVTYENITLKNIKK 286          
BLAST of GR312983 vs. ExPASy Swiss-Prot
Match: PGLR1_ASPNG (Polygalacturonase-1 OS=Aspergillus niger GN=pgaA PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1
Query:   79 RDNNIVKDVTISDSTVINSDNGVRVKTIYQATGAVSGVTFSNIKLSNI 222
            RD+N VK+VTISDSTV NS NGVR+KTIY+ TG VS +T+SNI+LS I
Sbjct:  239 RDDNTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGI 286          
BLAST of GR312983 vs. ExPASy Swiss-Prot
Match: PGLR_PENJA (Polygalacturonase OS=Penicillium janthinellum PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.444e-11
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = 1
Query:   79 RDNNIVKDVTISDSTVINSDNGVRVKTIYQATGAVSGVTFSNIKLSNI 222
            RD+N VK+VTI+DSTV +S NGVR+KT+Y ATG+VS VTFS+I +S I
Sbjct:  242 RDDNTVKNVTITDSTVTDSANGVRIKTVYDATGSVSDVTFSDITVSGI 289          
BLAST of GR312983 vs. ExPASy Swiss-Prot
Match: PGLR1_COLLN (Endopolygalacturonase 1 OS=Colletotrichum lindemuthianum GN=PG1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.899e-11
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    7 GSNIKFVXXXXXXXXXXXXXXXXLRDNNIVKDVTISDSTVINSDNGVRVKTIYQATGAVSGVTFSNIKLSNIAR 228
            G+NI F                  R +N+VK V+I++S +INSDNGVR+KT+  ATG VS +T+S I LSNIA+
Sbjct:  210 GTNITFTGGTCSGGHGLSIGSVGGRKDNVVKSVSITNSKIINSDNGVRIKTVAGATGPVSDITYSGITLSNIAK 283          
The following BLAST results are available for this feature:
BLAST of GR312983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PGLR_PENDI6.609e-2377.03Polygalacturonase OS=Penicillium digitatum GN=PG1 ... [more]
PGLR1_PENOL3.288e-1474.00Polygalacturonase 1 OS=Penicillium olsonii GN=PG1 ... [more]
PGLRB_ASPFL5.249e-1247.30Polygalacturonase B OS=Aspergillus flavus GN=pecB ... [more]
PGLR1_ASPNG8.954e-1270.83Polygalacturonase-1 OS=Aspergillus niger GN=pgaA P... [more]
PGLR_PENJA4.444e-1166.67Polygalacturonase OS=Penicillium janthinellum PE=3... [more]
PGLR1_COLLN9.899e-1145.95Endopolygalacturonase 1 OS=Colletotrichum lindemut... [more]
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Properties
Property NameValue
Genbank descriptionC06057A06 RindPdigS Citrus sinensis cDNA clone N06E04, mRNA sequence.