GR312981

Overview
NameGR312981
Unique NameGR312981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2810 contig Csv1_Contig2810:1005..1676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312981 vs. ExPASy Swiss-Prot
Match: LHT1_ARATH (Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.922e-34
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = 3
Query:  405 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEINL 638
            YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+GVCIVYMVTGGKSL K HEL+C + CK I L
Sbjct:   82 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVC-DDCKPIKL 158          
BLAST of GR312981 vs. ExPASy Swiss-Prot
Match: LHTL2_ARATH (Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.572e-32
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 3
Query:  405 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEI 632
            YTLWQMV+MHEMVPGKRFDRYHELGQHAFGEKLGL+IVVPQQLIVEVGV IVYMVTGGKSL K+H+LLC + CK I
Sbjct:   77 YTLWQMVQMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSLKKIHDLLCTD-CKNI 151          
BLAST of GR312981 vs. ExPASy Swiss-Prot
Match: LHTL1_ARATH (Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.773e-31
Identity = 63/79 (79.75%), Postives = 71/79 (89.87%), Query Frame = 3
Query:  405 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEINLA 641
            YTLWQMVEMHEMVPGKRFDRYHELGQ AFGE+LGLYI+VPQQ+IVEVGVCIVYMVTGG+SL K HE+ C++ C  I L+
Sbjct:   89 YTLWQMVEMHEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYMVTGGQSLKKFHEIACQD-CSPIRLS 166          
BLAST of GR312981 vs. ExPASy Swiss-Prot
Match: LHT2_ARATH (Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.157e-31
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 3
Query:  405 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEI 632
            YTLWQMVEMHE+VPGKR DRYHELGQHAFGEKLGL+IVVPQQLIVEVGV IVYMVTGG SL KVH+L+C + CKEI
Sbjct:   77 YTLWQMVEMHEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVCPD-CKEI 151          
BLAST of GR312981 vs. ExPASy Swiss-Prot
Match: LHTL4_ARATH (Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.995e-26
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 3
Query:  405 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 605
            YTLWQM+EMHEM  G+RFDRYHELGQ AFG+KLGLYI+VP QL+VE+ VCIVYMVTGGKSL  VH+L
Sbjct:   80 YTLWQMIEMHEMFEGQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEISVCIVYMVTGGKSLKNVHDL 146          
BLAST of GR312981 vs. ExPASy Swiss-Prot
Match: LHTL3_ARATH (Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.479e-25
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 3
Query:  405 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 605
            YT WQM+EMHEM  GKRFDRYHELGQ AFG+KLGLYIVVP QL+VE   CIVYMVTGG+SL K+H+L
Sbjct:   82 YTFWQMIEMHEMFEGKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQL 148          
BLAST of GR312981 vs. ExPASy Swiss-Prot
Match: LTAA_AERJA (L-allo-threonine aldolase OS=Aeromonas jandaei GN=ltaA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 56/118 (47.46%), Postives = 81/118 (68.64%), Query Frame = 2
Query:   11 DSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGV 364
            DS S+CLSKGLGAPVGS++VGS  FI +ARRLRK +GGGMRQ            Q++V+ + D DH++A+ LAEGL  L G+R+D+  V+TN+V+ ++T     ++A LL  ++  G+
Sbjct:  191 DSVSICLSKGLGAPVGSLLVGSHAFIARARRLRKMVGGGMRQAGILAQAGLFALQQHVVRLAD-DHRRARQLAEGLAALPGIRLDLAQVQTNMVFLQLTSG---ESAPLLAFMKARGI 304          
BLAST of GR312981 vs. ExPASy Swiss-Prot
Match: LHTL5_ARATH (Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.096e-20
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 3
Query:  405 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELL 608
            Y+LWQMV++HE VPGKR DRY ELGQ AFG KLG +IV+PQQL+V++   IVY VTGGKSL K  ELL
Sbjct:   83 YSLWQMVQLHEAVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFVELL 150          
BLAST of GR312981 vs. ExPASy Swiss-Prot
Match: LHTL6_ARATH (Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.125e-20
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 3
Query:  408 TLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC 611
            T+WQMV++HE VPG RFDRY +LG++AFG KLG +IV+PQQLIV+VG  IVYMVTGGK L +  E+ C
Sbjct:   77 TMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMVTGGKCLKQFVEITC 144          
BLAST of GR312981 vs. ExPASy Swiss-Prot
Match: LTAE_ECOLI (Low specificity L-threonine aldolase OS=Escherichia coli (strain K12) GN=ltaE PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.667e-13
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 2
Query:    2 QAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 316
            Q  DS ++CLSKGLG PVGS++VG++++IK+A R RK  GGGMRQ            + NV   L  DH  A  +AE   QL+    DV   +TN+++  + E++
Sbjct:  186 QYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAIRWRKMTGGGMRQSGILAAAGIYALKNNV-ARLQEDHDNAAWMAE---QLREAGADVMRQDTNMLFVRVGEEN 286          
The following BLAST results are available for this feature:
BLAST of GR312981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
LHT1_ARATH2.922e-3488.46Lysine histidine transporter 1 OS=Arabidopsis thal... [more]
LHTL2_ARATH3.572e-3286.84Lysine histidine transporter-like 2 OS=Arabidopsis... [more]
LHTL1_ARATH1.773e-3179.75Lysine histidine transporter-like 1 OS=Arabidopsis... [more]
LHT2_ARATH5.157e-3185.53Lysine histidine transporter 2 OS=Arabidopsis thal... [more]
LHTL4_ARATH4.995e-2679.10Lysine histidine transporter-like 4 OS=Arabidopsis... [more]
LHTL3_ARATH2.479e-2577.61Lysine histidine transporter-like 3 OS=Arabidopsis... [more]
LTAA_AERJA3.351e-2247.46L-allo-threonine aldolase OS=Aeromonas jandaei GN=... [more]
LHTL5_ARATH4.096e-2069.12Lysine histidine transporter-like 5 OS=Arabidopsis... [more]
LHTL6_ARATH9.125e-2066.18Lysine histidine transporter-like 6 OS=Arabidopsis... [more]
LTAE_ECOLI1.667e-1340.95Low specificity L-threonine aldolase OS=Escherichi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06057A04 RindPdigS Citrus sinensis cDNA clone N04H12, mRNA sequence.