GR312968

Overview
NameGR312968
Unique NameGR312968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig561 contig Csv1_Contig561:460..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312968 vs. ExPASy Swiss-Prot
Match: RETOL_ARATH (Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 5.416e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 1
Query:    1 TRAAWVQAGATLGQLYYRIAKKSKNLGFPGGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDAKGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKVRLVTVPSTVTRFLVTRSLDQNATEIVHKWQ 399
            + +AW+ AGATLG++YYRI +KS+  GFP G+CPTV             M+RKFGL+ D + DA ++D  GR LDRK+MGEDLFWAI GGGG S+GV++ +KV+LV VPS VT F V + +D  A ++VHKWQ
Sbjct:  150 SNSAWISAGATLGEVYYRIWEKSRVHGFPAGVCPTVGVGGHLSGGGYGNMVRKFGLSVDYVEDAKIVDVNGRVLDRKAMGEDLFWAITGGGGGSYGVVLGYKVKLVPVPSVVTVFRVEQYMDSGAVDMVHKWQ 282          
BLAST of GR312968 vs. ExPASy Swiss-Prot
Match: RETO_ESCCA (Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.742e-36
Identity = 72/134 (53.73%), Postives = 93/134 (69.40%), Query Frame = 1
Query:    1 TRAAWVQAGATLGQLYYRIAKKSKNLGFPGGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDAKGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKVRLVTVPSTVTRFLVTRSLD-QNATEIVHKWQ 399
            +  AWV++G+TLG+LYY I + S  LGF  G CPTV            +M RK+GLAADN+VDA LIDA G  LDR++MGED+FWAIRGGGG  +G I AWK++L+ VP  VT F VT+++    AT ++HKWQ
Sbjct:  134 SETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQ 267          
BLAST of GR312968 vs. ExPASy Swiss-Prot
Match: RETO_PAPSO (Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.129e-35
Identity = 69/134 (51.49%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    1 TRAAWVQAGATLGQLYYRIAKKSKNLGFPGGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDAKGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKVRLVTVPSTVTRFLVTRSLD-QNATEIVHKWQ 399
            +  AWV++GATLG+LYY IA+ +  LGF  G CPTV            +M RK+GLAADN+VDA LID+ G  LDR+ MG+D+FWAIRGGGG  +G I AWK++L+ VP  +T F VT+++  ++A+ ++HKWQ
Sbjct:  138 SETAWVESGATLGELYYAIAQSTDTLGFTAGWCPTVGSGGHISGGGFGMMSRKYGLAADNVVDAILIDSNGAILDREKMGDDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKLTVFRVTKNVGIEDASSLLHKWQ 271          
BLAST of GR312968 vs. ExPASy Swiss-Prot
Match: YVDP_BACSU (Uncharacterized FAD-linked oxidoreductase yvdP OS=Bacillus subtilis GN=yvdP PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.627e-11
Identity = 46/133 (34.59%), Postives = 63/133 (47.37%), Query Frame = 1
Query:   10 AWVQAGATLGQLYYRIAKKSKNLGF--PGGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDAKGRFLDR-KSMGEDLFWAIRGGGGASFGVIVAWKVRLVTVPSTVTRFLVTRSLDQNATEIVHKWQ 399
            A VQ G  +G L   +A+     GF  P G  PTV            V+ R  GL +DN++    +DAKGR +   +S  EDL WA RGGGG +FG    +  ++   P T T F +    +Q  T +   WQ
Sbjct:   98 ATVQTGIPVGPLVKGLARD----GFMAPFGDSPTVGIGGITMGGGFGVLSRSIGLISDNLLALKTVDAKGRIIHADQSHNEDLLWASRGGGGGNFGYNTQYTFKVHRAPKTATVFNIIWPWEQLET-VFKAWQ 225          
The following BLAST results are available for this feature:
BLAST of GR312968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RETOL_ARATH5.416e-3854.14Reticuline oxidase-like protein OS=Arabidopsis tha... [more]
RETO_ESCCA1.742e-3653.73Reticuline oxidase OS=Eschscholzia californica GN=... [more]
RETO_PAPSO1.129e-3551.49Reticuline oxidase OS=Papaver somniferum GN=BBE1 P... [more]
YVDP_BACSU9.627e-1134.59Uncharacterized FAD-linked oxidoreductase yvdP OS=... [more]
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Properties
Property NameValue
Genbank descriptionC06054F03 RindPdigS Citrus sinensis cDNA clone N14G04, mRNA sequence.