GR312961

Overview
NameGR312961
Unique NameGR312961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2810 contig Csv1_Contig2810:1411..1680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312961 vs. ExPASy Swiss-Prot
Match: LHT1_ARATH (Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.191e-40
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = -2
Query:    3 TLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAFVHF 269
            TLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+GVCIVYMVTGGKSL K HEL+C + CK IKL+YFIMIFA VHF
Sbjct:   83 TLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVC-DDCKPIKLTYFIMIFASVHF 170          
BLAST of GR312961 vs. ExPASy Swiss-Prot
Match: LHTL2_ARATH (Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.103e-37
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = -2
Query:    3 TLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAFVHF 269
            TLWQMV+MHEMVPGKRFDRYHELGQHAFGEKLGL+IVVPQQLIVEVGV IVYMVTGGKSL K+H+LLC + CK I+ +Y+IMIFA +HF
Sbjct:   78 TLWQMVQMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSLKKIHDLLCTD-CKNIRTTYWIMIFASIHF 165          
BLAST of GR312961 vs. ExPASy Swiss-Prot
Match: LHTL1_ARATH (Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.363e-36
Identity = 71/89 (79.78%), Postives = 80/89 (89.89%), Query Frame = -2
Query:    3 TLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAFVHF 269
            TLWQMVEMHEMVPGKRFDRYHELGQ AFGE+LGLYI+VPQQ+IVEVGVCIVYMVTGG+SL K HE+ C++ C  I+LS+FIMIFA  HF
Sbjct:   90 TLWQMVEMHEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYMVTGGQSLKKFHEIACQD-CSPIRLSFFIMIFASSHF 177          
BLAST of GR312961 vs. ExPASy Swiss-Prot
Match: LHT2_ARATH (Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.766e-36
Identity = 72/89 (80.90%), Postives = 81/89 (91.01%), Query Frame = -2
Query:    3 TLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAFVHF 269
            TLWQMVEMHE+VPGKR DRYHELGQHAFGEKLGL+IVVPQQLIVEVGV IVYMVTGG SL KVH+L+C + CKEI+ +++IMIFA VHF
Sbjct:   78 TLWQMVEMHEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVCPD-CKEIRTTFWIMIFASVHF 165          
BLAST of GR312961 vs. ExPASy Swiss-Prot
Match: LHTL4_ARATH (Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.696e-29
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = -2
Query:    3 TLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC--KEPCKEIKLSYFIMIFAFVHF 269
            TLWQM+EMHEM  G+RFDRYHELGQ AFG+KLGLYI+VP QL+VE+ VCIVYMVTGGKSL  VH+L     + C ++++ +FI+IFA   F
Sbjct:   81 TLWQMIEMHEMFEGQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEISVCIVYMVTGGKSLKNVHDLALGDGDKCTKLRIQHFILIFASSQF 171          
BLAST of GR312961 vs. ExPASy Swiss-Prot
Match: LHTL3_ARATH (Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 8.010e-29
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = -2
Query:    3 TLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE-PCKEIKLSYFIMIFAFVHF 269
            T WQM+EMHEM  GKRFDRYHELGQ AFG+KLGLYIVVP QL+VE   CIVYMVTGG+SL K+H+L   +  C+++K+ +FI+IFA   F
Sbjct:   83 TFWQMIEMHEMFEGKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGDYECRKLKVRHFILIFASSQF 172          
BLAST of GR312961 vs. ExPASy Swiss-Prot
Match: LHTL6_ARATH (Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.941e-24
Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = -2
Query:    3 TLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAFVHF 269
            T+WQMV++HE VPG RFDRY +LG++AFG KLG +IV+PQQLIV+VG  IVYMVTGGK L +  E+ C   C  ++ SY+I+ F  VHF
Sbjct:   77 TMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMVTGGKCLKQFVEITC-STCTPVRQSYWILGFGGVHF 164          
BLAST of GR312961 vs. ExPASy Swiss-Prot
Match: LHTL5_ARATH (Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.604e-21
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = -2
Query:   15 TLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFA 269
            +LWQMV++HE VPGKR DRY ELGQ AFG KLG +IV+PQQL+V++   IVY VTGGKSL K  ELL     + I+ +Y+I+ FA
Sbjct:   84 SLWQMVQLHEAVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFVELLFPN-LEHIRQTYYILGFA 167          
BLAST of GR312961 vs. ExPASy Swiss-Prot
Match: LHTL8_ARATH (Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.838e-11
Identity = 27/72 (37.50%), Postives = 47/72 (65.28%), Query Frame = -2
Query:   54 TLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPC 269
            TLW +V++HE VPGKR++RY EL Q AFGE+LG+++ +   + +  G     ++ GG+++    +++C   C
Sbjct:  143 TLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLC 214          
The following BLAST results are available for this feature:
BLAST of GR312961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
LHT1_ARATH1.191e-4088.76Lysine histidine transporter 1 OS=Arabidopsis thal... [more]
LHTL2_ARATH2.103e-3782.02Lysine histidine transporter-like 2 OS=Arabidopsis... [more]
LHTL1_ARATH1.363e-3679.78Lysine histidine transporter-like 1 OS=Arabidopsis... [more]
LHT2_ARATH6.766e-3680.90Lysine histidine transporter 2 OS=Arabidopsis thal... [more]
LHTL4_ARATH4.696e-2964.84Lysine histidine transporter-like 4 OS=Arabidopsis... [more]
LHTL3_ARATH8.010e-2965.56Lysine histidine transporter-like 3 OS=Arabidopsis... [more]
LHTL6_ARATH5.941e-2459.55Lysine histidine transporter-like 6 OS=Arabidopsis... [more]
LHTL5_ARATH3.604e-2160.00Lysine histidine transporter-like 5 OS=Arabidopsis... [more]
LHTL8_ARATH9.838e-1137.50Lysine histidine transporter-like 8 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC06054E03 RindPdigS Citrus sinensis cDNA clone N07D10, mRNA sequence.