GR312943

Overview
NameGR312943
Unique NameGR312943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13549 contig Csv1_Contig13549:2..242. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of GR312943 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.898e-22
Identity = 54/83 (65.06%), Postives = 62/83 (74.70%), Query Frame = -2
Query:    1 KEFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKV---GKKVFAYSRPS 240
            KEFR+ +R  AVEA+Y DMAARHR+RF SI ILKVVE+E  + +RR Y+KQLL   LKFPLPHR  G V   GKKVFA  RPS
Sbjct:   91 KEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPS 173          
BLAST of GR312943 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.522e-22
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = -2
Query:    1 KEFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPS 240
            KE R++SR  AVE LYQDMAARHR+RF SIHILKV EIE    ++R Y+KQ L KDLKFPLPHR   +   K F+Y RPS
Sbjct:   92 KEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRV--QKSTKTFSYKRPS 169          
BLAST of GR312943 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.766e-12
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = -2
Query:    1 KEFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPS 240
            +E+R+++ + AV   Y+DM ARHR+R  SIHI+KV EI  N   RRP IKQ     +KFPLPHR   +     F   RP+
Sbjct:   95 REYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQEIAAN-KCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPN 173          
BLAST of GR312943 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.480e-11
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = -2
Query:    1 KEFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPS 240
            +E+R+++   AV   Y+DM ARHR+R  SI I+KV EI  +   RRP +KQ     +KFPLPHR   +  K  F   RP+
Sbjct:   95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAS-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPN 173          
BLAST of GR312943 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.480e-11
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = -2
Query:    1 KEFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPS 240
            +E+R+++   AV   Y+DM ARHR+R  SI I+KV EI  +   RRP +KQ     +KFPLPHR   +  K  F   RP+
Sbjct:   95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAS-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPN 173          
BLAST of GR312943 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.769e-11
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = -2
Query:    1 KEFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPS 240
            +E+R++S   AV   Y+DM ARHR+R  SI I+K VE+    + RRP +KQ     ++FPLP R         FAY RPS
Sbjct:   95 REYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPS 173          
BLAST of GR312943 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.769e-11
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = -2
Query:    1 KEFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPS 240
            +E+R+++   AV   Y+DM ARHR+R  SI I+KV EI      RRP +KQ     +KFPLPHR   +  K  F   RP+
Sbjct:   95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAG-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPN 173          
BLAST of GR312943 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.769e-11
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = -2
Query:    1 KEFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPS 240
            +E+R+++   AV   Y+DM ARHR+R  SI I+KV EI      RRP +KQ     +KFPLPHR   +  K  F   RP+
Sbjct:   95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAG-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPN 173          
The following BLAST results are available for this feature:
BLAST of GR312943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RL20_SCHPO1.898e-2265.0660S ribosomal protein L20 OS=Schizosaccharomyces p... [more]
RL20_YEAST5.522e-2263.7560S ribosomal protein L20 OS=Saccharomyces cerevis... [more]
RL18A_SALSA6.766e-1246.2560S ribosomal protein L18a OS=Salmo salar GN=rpl18... [more]
RL18A_HUMAN7.480e-1143.7560S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_BOVIN7.480e-1143.7560S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]
RL18A_SPOFR9.769e-1143.7560S ribosomal protein L18a OS=Spodoptera frugiperd... [more]
RL18A_RAT9.769e-1143.7560S ribosomal protein L18a OS=Rattus norvegicus GN... [more]
RL18A_MOUSE9.769e-1143.7560S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]
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Properties
Property NameValue
Genbank descriptionC06052F01 RindPdigS Citrus sinensis cDNA clone N06C05, mRNA sequence.