GR312940

Overview
NameGR312940
Unique NameGR312940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7082 contig Csv1_Contig7082:301..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312940 vs. ExPASy Swiss-Prot
Match: PAPS2_HUMAN (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 OS=Homo sapiens GN=PAPSS2 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.846e-28
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = -1
Query:    2 VLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTTPGLPYVDQAITYAGNWLIGGDWEVLEPIK 373
            VLSEGWA+PL GFMRE E+LQ +HF++L LDDG V+NMS+PIVL +  E K R+   ++  L       VAIL D E Y+H KEER +R WGTT    P++ + +  +G+WL+GGD +VLE I+
Sbjct:  259 VLSEGWATPLKGFMREKEYLQVMHFDTL-LDDG-VINMSIPIVLPVSAEDKTRLEGCSKFVLAHGGRR-VAILRDAEFYEHRKEERCSRVWGTTCTKHPHI-KMVMESGDWLVGGDLQVLEKIR 378          
BLAST of GR312940 vs. ExPASy Swiss-Prot
Match: PAPS1_CAVPO (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Cavia porcellus GN=PAPSS1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.437e-27
Identity = 64/123 (52.03%), Postives = 83/123 (67.48%), Query Frame = -1
Query:    5 VLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTTPGLPYVDQAITYAGNWLIGGDWEVLEPI 373
            VL+EGWA+PL GFMRE E+LQ LHF+ L   DG V+N+SVPIVL   +E K R+   T  AL+  +   VAIL + E ++H KEER AR WGTT    PY+ + +   G+WLIGGD +VL+ I
Sbjct:  269 VLAEGWATPLGGFMREREYLQCLHFDCLL--DGGVINLSVPIVLTATEEDKERLDGCTAFALI-YEGRRVAILRNPEFFEHRKEERCARQWGTTCKSHPYI-KMVMEQGDWLIGGDLQVLDRI 387          
BLAST of GR312940 vs. ExPASy Swiss-Prot
Match: PAPS1_MOUSE (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Mus musculus GN=Papss1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.795e-27
Identity = 65/123 (52.85%), Postives = 83/123 (67.48%), Query Frame = -1
Query:    5 VLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTTPGLPYVDQAITYAGNWLIGGDWEVLEPI 373
            VL+EGWA+PL+GFMRE E+LQ LHF+ L   DG V+N+SVPIVL    E K R+   T  ALV  +   VAIL + E ++H KEER AR WGTT    PY+ + +   G+WLIGGD +VL+ I
Sbjct:  269 VLAEGWATPLNGFMREREYLQCLHFDCLL--DGGVINLSVPIVLTATHEDKERLDGCTAFALV-YEGRRVAILRNPEFFEHRKEERCARQWGTTCKNHPYI-KMVLEQGDWLIGGDLQVLDRI 387          
BLAST of GR312940 vs. ExPASy Swiss-Prot
Match: PAPS2_MOUSE (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 OS=Mus musculus GN=Papss2 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.686e-26
Identity = 64/129 (49.61%), Postives = 90/129 (69.77%), Query Frame = -1
Query:    2 VLSEGWASPLSGFMRESEFLQTLHFNSLRLD-----DGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTTPGLPYVDQAITYAGNWLIGGDWEVLEPIK 373
            +LSEGWA+PL GFMRE E+LQTLHF++L LD     DG V+NMS+PIVL +  + K R+   ++ AL+  +   VA+L D E Y+H KEER +R WGT T   P++ + +  +G+WL+GGD +VLE I+
Sbjct:  260 ILSEGWATPLKGFMREKEYLQTLHFDTL-LDGVVPRDG-VINMSIPIVLPVSADDKARLEGCSKFALM-YEGRRVALLQDPEFYEHRKEERCSRVWGTATAKHPHI-KMVMESGDWLVGGDLQVLERIR 384          
BLAST of GR312940 vs. ExPASy Swiss-Prot
Match: PAPS1_HUMAN (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.686e-26
Identity = 63/123 (51.22%), Postives = 83/123 (67.48%), Query Frame = -1
Query:    5 VLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTTPGLPYVDQAITYAGNWLIGGDWEVLEPI 373
            VL+EGWA+PL+GFMRE E+LQ LHF+ L   DG V+N+SVPIVL    E K R+   T  AL+  +   VAIL + E ++H KEER AR WGTT    PY+ + +   G+WLIGGD +VL+ +
Sbjct:  269 VLAEGWATPLNGFMREREYLQCLHFDCLL--DGGVINLSVPIVLTATHEDKERLDGCTAFALM-YEGRRVAILRNPEFFEHRKEERCARQWGTTCKNHPYI-KMVMEQGDWLIGGDLQVLDRV 387          
BLAST of GR312940 vs. ExPASy Swiss-Prot
Match: PAPSS_URECA (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase OS=Urechis caupo PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.153e-25
Identity = 63/123 (51.22%), Postives = 81/123 (65.85%), Query Frame = -1
Query:    5 VLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTTPGLPYVDQAITYAGNWLIGGDWEVLEPI 373
            VLSEGWA+PL+GFMRE E+LQ+ HF  L   DG V N S+PIVL +    K R+  S+  AL   +   +AIL   E Y+H KEER +R +GT+  G PYV + I  +G+WL+GGD EVLE I
Sbjct:  254 VLSEGWATPLTGFMREREYLQSQHFGCLL--DGGVTNQSIPIVLPVHTADKDRLEGSSAFAL-SYEGKRIAILRTPEFYEHRKEERCSRQFGTSNAGQPYV-KMIMESGDWLVGGDLEVLERI 372          
The following BLAST results are available for this feature:
BLAST of GR312940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PAPS2_HUMAN6.846e-2851.61Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
PAPS1_CAVPO4.437e-2752.03Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
PAPS1_MOUSE5.795e-2752.85Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
PAPS2_MOUSE1.686e-2649.61Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
PAPS1_HUMAN1.686e-2651.22Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
PAPSS_URECA4.153e-2551.22Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
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Properties
Property NameValue
Genbank descriptionC06052A02 RindPdigS Citrus sinensis cDNA clone N02B04, mRNA sequence.