GO241942

Overview
NameGO241942
Unique NameGO241942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241942 vs. ExPASy Swiss-Prot
Match: FB304_ARATH (F-box protein At3g54460 OS=Arabidopsis thaliana GN=At3g54460 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.874e-99
Identity = 116/194 (59.79%), Postives = 144/194 (74.23%), Query Frame = 3
Query:    3 SQEYAFIKYXXXXXXXXXXXXEWCRLPVITPCRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPKDLIELRPSYRQDDWNPDWQSTSSSKVAYLVEKLKVLQEANWEICYAFNEDSSVKHIEELPFTPQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKF 584
            ++EY+FI+             EWCRLPVITPCRH+LCLDCVA+DSE+C++ GCG+LYEMQ+PE L RPENPNPKWPVPKDLIEL+PSY+QDDWNPDWQSTSSSKV+YLV++L+ L E N +   +FN+  +    +  P T     +  FL ++L+  +  S     DKV+IFSQFLEHIHVIEQQLT AGIKF
Sbjct: 1032 TEEYSFIQDSLIGGCNCKRCGEWCRLPVITPCRHLLCLDCVALDSERCTISGCGYLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVSYLVDRLRKLHEGNKKSILSFNKTDNDNLEDNPPGT-----SEAFLGKELHGQDCGSQMVFVDKVLIFSQFLEHIHVIEQQLTTAGIKF 1220          

HSP 2 Score: 138.658 bits (348), Expect = 4.874e-99
Identity = 76/127 (59.84%), Postives = 93/127 (73.23%), Query Frame = 1
Query:  589 IKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTD------SVEDVERRACQT*T*RLDPHRTLP*LAERHYLSLLT 951
            +K+L MF++DA C+ALLMDGS +LGLDLSFVT VFLMEPIWD+S+EEQVISRAHRMGA RPI VETL MRGT+EEQM+ FL+D +      S + +E +   T        RTL  L E +YLS L+
Sbjct: 1233 MKALAMFQNDADCMALLMDGSGALGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVETLTMRGTIEEQMMRFLEDAEKSDRLLSGDYIEAKQETT-----RSRRTLHDLVESNYLSHLS 1354          
The following BLAST results are available for this feature:
BLAST of GO241942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB304_ARATH4.874e-9959.79F-box protein At3g54460 OS=Arabidopsis thaliana GN... [more]
back to top
Properties
Property NameValue
Genbank description590 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 732 5, mRNA sequence.