GO241928

Overview
NameGO241928
Unique NameGO241928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13782 contig Csv1_Contig13782:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: DHQSD_ARATH (Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.634e-35
Identity = 77/153 (50.33%), Postives = 101/153 (66.01%), Query Frame = 2
Query:   14 NGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPED 472
            + V S +SP+A K                  K +GA+V+I NR YERA  LA+A+ G+AL    L  + PE GM+LAN +++GM+PN +++P+ K+ALK Y LVFDAVYTPR TRLLREA E GA  VSG EMF+RQA  QF +FTG  AP++
Sbjct:  442 SSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVSGSEMFVRQAYEQFEIFTGLPAPKE 594          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_BREBN (Shikimate dehydrogenase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=aroE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.699e-16
Identity = 53/127 (41.73%), Postives = 75/127 (59.06%), Query Frame = 2
Query:  131 IFNRNYERAKALADAVSGEALHFEYLHEFFPEKGM----ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 499
            I NR+ ERA  LA+ V G  +  + + +   E  +    +L N ++IGM PN  ++PVP E L +   V D +Y P  TRLL+EA  +GATV SG+ MF+ Q    F L+TG  AP   MR++VL+Q
Sbjct:  153 IINRSRERAAVLAEHV-GMIVPTKIVEQGEGEAAIADSSLLINTTSIGMLPNVQETPVPAEWLHSGLTVSDLIYNPLETRLLKEARAIGATVHSGIGMFVNQGALAFELWTGEQAPTGVMREVVLQQ 278          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_PYRKO (Shikimate dehydrogenase OS=Pyrococcus kodakaraensis GN=aroE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 55/130 (42.31%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  110 SRGARVIIFNRNYERAKALAD-AVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE 496
            SR   V++ NR  E+AKAL    ++G+AL+ E L E+  E   +L NA+++GM  NS ++PVP E L+   +V D VY P  TRLL EA   G   V G+ M + Q +  FRL+TG    E  MR   LE
Sbjct:  142 SRDNEVVVLNRTPEKAKALERFGITGDALNRENLGEYL-EWAEVLINATSVGM--NSWETPVPAELLRRDLVVMDIVYKPLKTRLLTEAELRGCKTVDGLWMLVYQGIESFRLWTGFKPDEGLMRGAALE 268          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_HALWD (Shikimate dehydrogenase OS=Haloquadratum walsbyi (strain DSM 16790) GN=aroE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  116 GARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAP 466
            GA V I NR  ERA+ +A  + G+A               IL NA+++GM+P+S+Q+PVP+  L    +V DAVYTP  TRLLREA   GAT + G  M + Q +  F ++T   AP
Sbjct:  141 GAHVHIANRTVERAETIATDIGGQATAGGLDTRDEISDADILLNATSVGMDPDSNQTPVPQSYLHDGLVVLDAVYTPIETRLLREATAAGATTIDGAWMLLYQGVVAFEIWTEQDAP 257          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_METAC (Shikimate dehydrogenase OS=Methanosarcina acetivorans GN=aroE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 54/134 (40.30%), Postives = 71/134 (52.99%), Query Frame = 2
Query:  116 GARVIIFNRNYERAKALADAVSGEALHFEY-------LHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE 496
            GA + + NR  ERA  LA  V+  +L  +        L E   +   IL N + +GM PN+D +    E L +   VFD VY P  TRLL+EA   GA  VSGV M + Q    F+L+TG  AP + M+K VLE
Sbjct:  144 GAEITVVNRTEERAVELAKDVAAASLPGKINGTGLSGLKELLRDAD-ILINTTTLGMHPNTDTTIATAEELHSGLTVFDIVYNPLETRLLKEAKVAGAKTVSGVLMLVYQGAEAFKLWTGVEAPAELMKKTVLE 276          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_METMA (Shikimate dehydrogenase OS=Methanosarcina mazei GN=aroE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 54/134 (40.30%), Postives = 70/134 (52.24%), Query Frame = 2
Query:  116 GARVIIFNRNYERAKALADAVSGEALHFEY-------LHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE 496
            GA + + NR  ERA  LA  +S   L  +        L E   +   +L N + +GM PN+D + V  E L +   VFD VY P  TRLLREA   GA  +SGV M + Q    FRL+TG   P + M+K VLE
Sbjct:  144 GADITVINRTEERAVGLAREISAADLPGKIRGTGLSGLKELLRDAD-VLINTTTLGMHPNTDATIVTAEELHSGLTVFDIVYNPLETRLLREARTSGAKTISGVLMLVYQGAEAFRLWTGVEPPLELMKKTVLE 276          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_NATPD (Shikimate dehydrogenase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=aroE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 52/124 (41.94%), Postives = 68/124 (54.84%), Query Frame = 2
Query:  116 GARVIIFNRNYERAKALADAVSGEALH-FEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRK 484
            G  V I NR   RA ALA  V     H  + L E  P+   +L NA+++GME  +D++PVPK  L     V DAVY P  TRLLREA   GAT + G  M + Q +  F ++TG  AP + M +
Sbjct:  138 GMEVHIANRTVSRATALATEVPDATGHGLDELAELVPDAD-VLVNATSVGME--ADETPVPKRHLHEGLAVLDAVYAPLETRLLREADAAGATTIDGAWMLLFQGVEAFEIWTGKAAPVEPMNE 258          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_HALMA (Shikimate dehydrogenase OS=Haloarcula marismortui GN=aroE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  116 GARVIIFNRNYERAKALADAVSGEALH-FEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFM 478
            G  V I NR   +A ALAD V   + H  + L +       IL N +++GME   D++PVP +AL +   V DAVYTP  TRLL++AA  GAT V G  M + Q +  F  +TG  AP D M
Sbjct:  139 GLSVRIANRTESKADALADEVPDASGHGLDSLSDLLANAD-ILVNCTSVGME--EDKTPVPADALHSDLAVLDAVYTPIETRLLQDAAAAGATTVDGAWMLLYQGVEAFERWTGEDAPVDRM 257          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_METBF (Shikimate dehydrogenase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=aroE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 52/133 (39.10%), Postives = 65/133 (48.87%), Query Frame = 2
Query:  116 GARVIIFNRNYERAKALADAVSGEALHFEYLHEFFP------EKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE 496
            GA + I NR   RA  LA  +S  +L      +         +   IL N + +GM PN D +    E L     VFD VY P  TRLLREA   GA  VSGV M + Q    F+L+TG   P + M+K VLE
Sbjct:  144 GAEITIVNRTEGRAIELAKDISAASLSGNVTGKGLSGLKNLLQDANILINTTTLGMHPNVDTAIATAEDLHPDLTVFDIVYNPLETRLLREAKASGAKTVSGVLMLVYQGAEAFKLWTGIEPPVELMKKTVLE 276          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_PYRFU (Shikimate dehydrogenase OS=Pyrococcus furiosus GN=aroE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 2
Query:  110 SRGARVIIFNRNYERAKALAD-AVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVL 493
            S+ A V++ NR  E+AK L    + G++L       ++ E   IL NA+++GM  N ++S VPK  L+   +V D VY P NT LLR A E G   + G+ M + Q    FRL+TG     + MR++ L
Sbjct:  141 SKVANVVVLNRTIEKAKRLEKFGIVGDSLE---ALPYYVEWADILINATSVGM--NEEKSLVPKNLLRPGLVVMDIVYKPLNTLLLRYAQEKGCIAIDGLWMLVYQGAESFRLWTGEEGDVELMRRVAL 264          
The following BLAST results are available for this feature:
BLAST of GO241928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
DHQSD_ARATH1.634e-3550.33Bifunctional 3-dehydroquinate dehydratase/shikimat... [more]
AROE_BREBN1.699e-1641.73Shikimate dehydrogenase OS=Brevibacillus brevis (s... [more]
AROE_PYRKO4.942e-1642.31Shikimate dehydrogenase OS=Pyrococcus kodakaraensi... [more]
AROE_HALWD1.101e-1541.88Shikimate dehydrogenase OS=Haloquadratum walsbyi (... [more]
AROE_METAC1.438e-1540.30Shikimate dehydrogenase OS=Methanosarcina acetivor... [more]
AROE_METMA1.878e-1540.30Shikimate dehydrogenase OS=Methanosarcina mazei GN... [more]
AROE_NATPD7.136e-1541.94Shikimate dehydrogenase OS=Natronomonas pharaonis ... [more]
AROE_HALMA4.626e-1442.62Shikimate dehydrogenase OS=Haloarcula marismortui ... [more]
AROE_METBF1.030e-1339.10Shikimate dehydrogenase OS=Methanosarcina barkeri ... [more]
AROE_PYRFU3.916e-1337.21Shikimate dehydrogenase OS=Pyrococcus furiosus GN=... [more]

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Properties
Property NameValue
Genbank description576 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 718 5, mRNA sequence.