GO241858

Overview
NameGO241858
Unique NameGO241858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2154 contig Csv1_Contig2154:633..1095. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241858 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.255e-26
Identity = 48/75 (64.00%), Postives = 68/75 (90.67%), Query Frame = 3
Query:    3 PLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYR 227
            PL FTAPSGQE+WSYY+V++PLAN+++VNPV +KE   +KY+++ TV+GH+FWFMGFVN+EKAT+HLL S+S+++
Sbjct:  190 PLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDFQ 264          
BLAST of GO241858 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.332e-14
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   30 QEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEY 224
            Q  WSYYKV++P   + +VNP T + N SDKY+++++++ HEFWFMGFV +E A   L  ++  +
Sbjct:  193 QTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAVQSH 257          
BLAST of GO241858 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.049e-13
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = 3
Query:   30 QEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSL 215
            Q  WSYYKV+IPL  + +VNP     N ++KY+++++V+ HEFWFMGF+N++ A   L +SL
Sbjct:  230 QTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291          
BLAST of GO241858 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.394e-11
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 3
Query:   15 TAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSE 221
            T+P G     +YKV IPL  I+ VN     +  S +Y+++VTV+ ++FWFMGFV+++KA N L  +L+E
Sbjct:  139 TSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKALNE 207          
The following BLAST results are available for this feature:
BLAST of GO241858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GEML5_ARATH1.255e-2664.00GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEML1_ARATH9.332e-1444.62GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEM_ARATH6.049e-1348.39GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML7_ARATH7.394e-1143.48GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank description506 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 643 5, mRNA sequence.