GO241848

Overview
NameGO241848
Unique NameGO241848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:691..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.207e-31
Identity = 67/81 (82.72%), Postives = 71/81 (87.65%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 244
            RTLMEDEPEKYQSHF EYIK+GIEAD LE LYKKVHAAIRA+P  KKS+K  P  HKRYNLKKLTY+ERKARLVERL ALN
Sbjct:  208 RTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALN 288          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.653e-30
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 2
Query:    8 LMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 244
            LMEDEPEKYQSHF  YIK  +  DN+EE+YKKVHAAIR DP+ KKS+K+PP  HKRYNLKKLTYEERKA+L+ERL ALN
Sbjct:   29 LMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALN 107          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 4.294e-29
Identity = 58/81 (71.60%), Postives = 71/81 (87.65%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 244
            + L EDEPEK Q+HF  YIK+G+EA+++EE+YKKVHAAIRA+PN KK+EK  P EHKRYNLKKLTYEERK +L+ER+KALN
Sbjct:  208 KLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALN 288          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.609e-29
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 244
            R++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  209 RSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.325e-29
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 244
            R++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  209 RSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 7.325e-29
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 244
            R++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  209 RSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.131e-28
Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 244
            + L EDEPEK Q+HF  YIK+G+EA+++EELYKKVHAAIRADPN KK+ K  P +HKRYNLKKLTYEERK +L+ER+KALN
Sbjct:  208 KLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALN 288          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.863e-15
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKA 238
            +TL E+EPE +Q  F +YIK GI AD +EE+YKK H AIRADP++ +  K      KR+N  KLT  ERK R V+++KA
Sbjct:  209 KTLEENEPENFQRQFSQYIKNGITADGIEEMYKKAHEAIRADPDRAEIVKTKEPVKKRWNRAKLTLSERKDR-VKQIKA 286          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSE-KKPPAEHKRYNLKKLTYEERKARLVER 229
            R+L +D+ + ++  F +YIK G+ AD +E +YKK H AIRADP+ KK E KK   + KR+N +KLT  ERK R+ ++
Sbjct:  209 RSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 285          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.314e-13
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPA-EHKRYNLKKLTYEERKARL 220
            R+L E++ E ++  F  YIK GI AD+LE++YKK H AIR DP  K + KK  A   KR+N KKLT E+RK ++
Sbjct:  209 RSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKI 282          
The following BLAST results are available for this feature:
BLAST of GO241848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL5_CUCSA1.207e-3182.7260S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL5_SOLME8.653e-3075.9560S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL52_ARATH4.294e-2971.6060S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL52_ORYSJ5.609e-2972.8460S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL51_ORYSJ7.325e-2972.8460S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI7.325e-2972.8460S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ARATH2.131e-2871.6060S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL5_LYSTE7.863e-1551.9060S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_BOMMO1.483e-1346.7560S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_DROME4.314e-1350.0060S ribosomal protein L5 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank description496 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 633 5, mRNA sequence.