GO241836

Overview
NameGO241836
Unique NameGO241836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1473 contig Csv1_Contig1473:170..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241836 vs. ExPASy Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.021e-28
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 2
Query:    2 YQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 193
            YQSTKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAF
Sbjct:   32 YQSTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          
BLAST of GO241836 vs. ExPASy Swiss-Prot
Match: RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.742e-28
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 2
Query:    2 YQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 193
            YQ+TKKRASGPKCPVTGKRIQGIPHLRP+EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAF
Sbjct:   32 YQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          
BLAST of GO241836 vs. ExPASy Swiss-Prot
Match: RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.275e-28
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 2
Query:    2 YQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 193
            YQ+TKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAF
Sbjct:   32 YQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          
BLAST of GO241836 vs. ExPASy Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.972e-28
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 2
Query:    2 YQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 193
            YQ+TKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL RNRRTVNRAYGGVLSG AVRERIIRAF
Sbjct:   32 YQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95          
BLAST of GO241836 vs. ExPASy Swiss-Prot
Match: RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.926e-27
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 2
Query:    2 YQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 193
            YQ+T KRASGPKCPVTGKRIQGIPHLRPAEYKRSRL RN RTVNRAYGGVLSG AVRERI+RAF
Sbjct:   32 YQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAF 95          
The following BLAST results are available for this feature:
BLAST of GO241836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL34_TOBAC1.021e-2895.3160S ribosomal protein L34 OS=Nicotiana tabacum GN=... [more]
RL341_ARATH1.742e-2893.7560S ribosomal protein L34-1 OS=Arabidopsis thalian... [more]
RL342_ARATH2.275e-2893.7560S ribosomal protein L34-2 OS=Arabidopsis thalian... [more]
RL34_PEA2.972e-2893.7560S ribosomal protein L34 OS=Pisum sativum GN=RPL3... [more]
RL343_ARATH1.926e-2790.6360S ribosomal protein L34-3 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank description484 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 621 5, mRNA sequence.