GO241716

Overview
NameGO241716
Unique NameGO241716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241716_ssr31 microsatellite GO241716_ssr31:31..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13760 contig Csv1_Contig13760:1..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241716 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.904e-24
Identity = 70/189 (37.04%), Postives = 102/189 (53.97%), Query Frame = 1
Query:   46 MKTSFVVKLSFLILALATKAQ---LGTSESEPVLDVYGNKVESNLEYKLLEVKNGTSGGFSIHGGTSGE-CPLDVVQLSSPTERDHYVRLLPFGNST----VVRESTDLNL-----------IEPVWTVGNYNDSLGKWFLTTGGIIGHPGAKTLLNWFKLEKVSVSIYNLVHCPSVCDSCVKLCNKVG 555
            MKT+  V L  L+ A  +K+    +  + + PVLD  G+++++ ++Y +L   +G  GG    G  +G+ CP  VVQ  S  +    V    F N+     VVR STD+N+              VW + NY++S GKW++TT G+ G PG  TL +WFK+EK  V  Y    CPSVCDSC  LC+ +G
Sbjct:    1 MKTATAVVL--LLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVI---FSNADSKDDVVRVSTDVNIEFVPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLGYKFRFCPSVCDSCTTLCSDIG 184          
BLAST of GO241716 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 4.773e-22
Identity = 67/194 (34.54%), Postives = 97/194 (50.00%), Query Frame = 1
Query:   46 MKTSFVVKLSFL----ILALATKAQLGTSES--EPVLDVYGNKVESNLEYKLLEVKNGTSGGFSIHGGTSGE---CPLDVVQLSSPTERDHYVRLLPFG-NSTVVRESTDLNL-----------IEPVWTVGNYNDSLGKWFLTTGGIIGHPGAKTLLNWFKLEKVSVS-IYNLVHCPSVCDSCVKLCNKVGIF 561
            MK   ++ LSF     +LA A    L  ++S   PVLD+ G K+ +   Y ++ V     GG ++   T      CP  VVQ     + D  +   P      VVR STDLN+              VW +  Y++S G++F+T GG+ G+PG +T+ +WFK+E+   S  Y LV CP+VC SC   C  VGI+
Sbjct:    1 MKELTMLSLSFFFVSALLAAAANPLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGIY 194          
The following BLAST results are available for this feature:
BLAST of GO241716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC3.904e-2437.0421 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU4.773e-2234.54Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank description364 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 494 5, mRNA sequence.