GO241700

Overview
NameGO241700
Unique NameGO241700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241700_ssr143 microsatellite GO241700_ssr143:143..152. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5491 contig Csv1_Contig5491:77..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241700 vs. ExPASy Swiss-Prot
Match: RPB11_ARATH (DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis thaliana GN=RPB13.6 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.006e-53
Identity = 101/116 (87.07%), Postives = 111/116 (95.69%), Query Frame = 3
Query:   39 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAKHSRVY 386
            MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD LK+ FEAE+AK S  +
Sbjct:    1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116          
BLAST of GO241700 vs. ExPASy Swiss-Prot
Match: RPB11_DICDI (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum GN=polr2j PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.482e-28
Identity = 53/115 (46.09%), Postives = 87/115 (75.65%), Query Frame = 3
Query:   39 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAKHSRV 383
            MNAPDR+E FV+P+G KKV+  RDTKI NA+ FTI +E+HTIGN++RMQL  D++++FAGY++PHPL++ + +RI T + ++P++   +++  L +E  +L+++F  ++ K   V
Sbjct:    1 MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQKKRNV 115          
BLAST of GO241700 vs. ExPASy Swiss-Prot
Match: RPB11_MOUSE (DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus GN=Polr2j PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.603e-27
Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 3
Query:   39 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAEL 365
            MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F   +
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRGAI 109          
BLAST of GO241700 vs. ExPASy Swiss-Prot
Match: RPB11_HUMAN (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens GN=POLR2J PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.603e-27
Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 3
Query:   39 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAEL 365
            MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F   +
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 109          
BLAST of GO241700 vs. ExPASy Swiss-Prot
Match: RPB11_BOVIN (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus GN=POLR2J PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.603e-27
Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 3
Query:   39 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAEL 365
            MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F   +
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 109          
BLAST of GO241700 vs. ExPASy Swiss-Prot
Match: RPB11_DROME (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster GN=Rpb11 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.706e-27
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 3
Query:   39 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 356
            MNAP  +E F++ EG KK+  E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAGYK+PHPL++K ++RI TT+  SP +A+  AI DL  EL   +  F+
Sbjct:    1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 106          
BLAST of GO241700 vs. ExPASy Swiss-Prot
Match: RPB11_ANOGA (DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae GN=Rpb11 PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26
Identity = 56/105 (53.33%), Postives = 76/105 (72.38%), Query Frame = 3
Query:   39 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 353
            MNAP  +E F++ EG KK+  E D K+ NAA FT+ +E+HT+GN++R QL +D NVLFAGYKLPHPL++K ++RI TTS+ SP +A+  AI DL  EL   +  F
Sbjct:    1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERF 105          
BLAST of GO241700 vs. ExPASy Swiss-Prot
Match: RPB1B_HUMAN (DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo sapiens GN=POLR2J2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.582e-25
Identity = 54/105 (51.43%), Postives = 76/105 (72.38%), Query Frame = 3
Query:   39 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 353
            MNAP  +E F++ EG +K++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F
Sbjct:    1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104          
BLAST of GO241700 vs. ExPASy Swiss-Prot
Match: RPB1C_HUMAN (DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens GN=POLR2J3 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.753e-25
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 3
Query:   39 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 353
            MNAP  +E F++ EG +K++  +DTK+ NA  FT+ +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F
Sbjct:    1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104          
BLAST of GO241700 vs. ExPASy Swiss-Prot
Match: RPB11_CAEBR (Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis briggsae GN=CBG20834 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.417e-23
Identity = 53/111 (47.75%), Postives = 79/111 (71.17%), Query Frame = 3
Query:   39 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAK 371
            MNAP  +E F++ +  KK+  E+DTK+ NAA FTI +E+HT+GN+L++QL +D  VLFAGYK PHPL++KI++R+ TT+ ++P  A   AI DL  EL  L+   ++ + K
Sbjct:    1 MNAPAAFESFLLLDD-KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRIDSAIKK 110          
The following BLAST results are available for this feature:
BLAST of GO241700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RPB11_ARATH1.006e-5387.07DNA-directed RNA polymerase II subunit RPB11 OS=Ar... [more]
RPB11_DICDI9.482e-2846.09DNA-directed RNA polymerase II subunit rpb11 OS=Di... [more]
RPB11_MOUSE3.603e-2750.46DNA-directed RNA polymerase II subunit RPB11 OS=Mu... [more]
RPB11_HUMAN3.603e-2750.46DNA-directed RNA polymerase II subunit RPB11-a OS=... [more]
RPB11_BOVIN3.603e-2750.46DNA-directed RNA polymerase II subunit RPB11 OS=Bo... [more]
RPB11_DROME4.706e-2752.83DNA-directed RNA polymerase II subunit RPB11 OS=Dr... [more]
RPB11_ANOGA1.788e-2653.33DNA-directed RNA polymerase II subunit RPB11 OS=An... [more]
RPB1B_HUMAN2.582e-2551.43DNA-directed RNA polymerase II subunit RPB11-b1 OS... [more]
RPB1C_HUMAN5.753e-2550.48DNA-directed RNA polymerase II subunit RPB11-b2 OS... [more]
RPB11_CAEBR1.417e-2347.75Probable DNA-directed RNA polymerase II subunit RP... [more]

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Properties
Property NameValue
Genbank description348 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 477 5, mRNA sequence.