GO241515

Overview
NameGO241515
Unique NameGO241515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13733 contig Csv1_Contig13733:1..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241515 vs. ExPASy Swiss-Prot
Match: CHMP1_DICDI (Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.132e-27
Identity = 63/140 (45.00%), Postives = 91/140 (65.00%), Query Frame = 1
Query:  127 NQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVTWRFKQSSWESAMAGSTSLSTP 546
            NQ+  LKFTSK L++Q                     GNMDGARIYA+N+IR++ + +NYLRLASR+DAV +R++T  +M ++  SMANIVKS+E S+   +L+K+++ MD FE+QF     +    E+AM  +T+LSTP
Sbjct:    3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDLDVQSVYVENAMNQTTTLSTP 142          

HSP 2 Score: 21.1718 bits (43), Expect = 1.132e-27
Identity = 8/15 (53.33%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  554 EVNSLMQQVADDYGL 598
            +V+ L+ QVAD++GL
Sbjct:  145 QVDLLISQVADEHGL 159          
BLAST of GO241515 vs. ExPASy Swiss-Prot
Match: CHM1B_BOVIN (Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.397e-24
Identity = 59/150 (39.33%), Postives = 89/150 (59.33%), Query Frame = 1
Query:  103 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVTWRFKQSSWESAMAGSTSLSTPEG 552
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD FE QF T   +    E  M+ +T+L+TP+G
Sbjct:    1 MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQG 147          

HSP 2 Score: 23.483 bits (49), Expect = 1.397e-24
Identity = 8/18 (44.44%), Postives = 16/18 (88.89%), Query Frame = 2
Query:  548 RGEVNSLMQQVADDYGLE 601
            +G+V+ L+Q++AD+ GL+
Sbjct:  146 QGQVDMLLQEMADEAGLD 163          
BLAST of GO241515 vs. ExPASy Swiss-Prot
Match: CHM1B_DANRE (Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.080e-24
Identity = 56/150 (37.33%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  103 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVTWRFKQSSWESAMAGSTSLSTPEG 552
            M + EK    + +LKF +K LQR                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VK ++++L + NL+K+S  M+ FE+QF T   + +  E +M+ +T+L+TP+G
Sbjct:    1 MSSMEK---HLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQG 147          

HSP 2 Score: 23.483 bits (49), Expect = 3.080e-24
Identity = 8/18 (44.44%), Postives = 16/18 (88.89%), Query Frame = 2
Query:  548 RGEVNSLMQQVADDYGLE 601
            +G+V++LM ++AD+ GL+
Sbjct:  146 QGQVDTLMMEMADEAGLD 163          
BLAST of GO241515 vs. ExPASy Swiss-Prot
Match: CHM1B_HUMAN (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.947e-23
Identity = 58/149 (38.93%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  103 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVTWRFKQSSWESAMAGSTSLSTPE 549
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD FE QF T   +    E  M+ +T+L+TP+
Sbjct:    1 MSNMEK---HLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQ 146          

HSP 2 Score: 21.1718 bits (43), Expect = 1.947e-23
Identity = 7/18 (38.89%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  548 RGEVNSLMQQVADDYGLE 601
            + +V+ L+Q++AD+ GL+
Sbjct:  146 QNQVDMLLQEMADEAGLD 163          
BLAST of GO241515 vs. ExPASy Swiss-Prot
Match: CHM1B_CHICK (Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.290e-23
Identity = 57/149 (38.26%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  103 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVTWRFKQSSWESAMAGSTSLSTPE 549
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF T   +    E+ M+ +T+L+TP+
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTTPQ 146          

HSP 2 Score: 21.1718 bits (43), Expect = 4.290e-23
Identity = 7/18 (38.89%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  548 RGEVNSLMQQVADDYGLE 601
            + +V+ L+Q++AD+ GL+
Sbjct:  146 QNQVDMLLQEMADEAGLD 163          
BLAST of GO241515 vs. ExPASy Swiss-Prot
Match: CH1B1_MOUSE (Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.263e-23
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  103 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVTWRFKQSSWESAMAGSTSLSTPE 549
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF T   +    E  M+ +T+L+TP+
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQ 146          

HSP 2 Score: 21.1718 bits (43), Expect = 7.263e-23
Identity = 7/18 (38.89%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  548 RGEVNSLMQQVADDYGLE 601
            + +V+ L+Q++AD+ GL+
Sbjct:  146 QNQVDMLLQEMADEAGLD 163          
BLAST of GO241515 vs. ExPASy Swiss-Prot
Match: CH1B2_MOUSE (Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.709e-22
Identity = 56/149 (37.58%), Postives = 87/149 (58.39%), Query Frame = 1
Query:  103 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVTWRFKQSSWESAMAGSTSLSTPE 549
            M N EK    + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF T   +    E  M+ +T+L+TP+
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQ 146          

HSP 2 Score: 21.1718 bits (43), Expect = 2.709e-22
Identity = 7/18 (38.89%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  548 RGEVNSLMQQVADDYGLE 601
            + +V+ L+Q++AD+ GL+
Sbjct:  146 QNQVDMLLQEMADEAGLD 163          
BLAST of GO241515 vs. ExPASy Swiss-Prot
Match: CHM1B_XENTR (Charged multivesicular body protein 1b OS=Xenopus tropicalis GN=chmp1b PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.589e-21
Identity = 55/149 (36.91%), Postives = 87/149 (58.39%), Query Frame = 1
Query:  103 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVTWRFKQSSWESAMAGSTSLSTPE 549
            M + EK    + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF T   +    E  M+ +T+L+TP+
Sbjct:    1 MSSMEK---NLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQ 146          
BLAST of GO241515 vs. ExPASy Swiss-Prot
Match: CHM1B_XENLA (Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.589e-21
Identity = 55/149 (36.91%), Postives = 87/149 (58.39%), Query Frame = 1
Query:  103 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVTWRFKQSSWESAMAGSTSLSTPE 549
            M + EK    + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF T   +    E  M+ +T+L+TP+
Sbjct:    1 MSSMEK---HLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQ 146          
BLAST of GO241515 vs. ExPASy Swiss-Prot
Match: CHM1A_PONAB (Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.293e-21
Identity = 51/139 (36.69%), Postives = 83/139 (59.71%), Query Frame = 1
Query:  133 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVTWRFKQSSWESAMAGSTSLSTPE 549
            +  LKFT+K L++                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+MA + K+L+ +L+T +LQK+S  MD FE+Q        S  E +M+ +T+L+TP+
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQ 143          

HSP 2 Score: 21.9422 bits (45), Expect = 8.293e-21
Identity = 8/16 (50.00%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  554 EVNSLMQQVADDYGLE 601
            +V+SL+ Q+A++ GLE
Sbjct:  145 QVDSLIMQIAEENGLE 160          
The following BLAST results are available for this feature:
BLAST of GO241515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CHMP1_DICDI1.132e-2745.00Charged multivesicular body protein 1 OS=Dictyoste... [more]
CHM1B_BOVIN1.397e-2439.33Charged multivesicular body protein 1b OS=Bos taur... [more]
CHM1B_DANRE3.080e-2437.33Charged multivesicular body protein 1b OS=Danio re... [more]
CHM1B_HUMAN1.947e-2338.93Charged multivesicular body protein 1b OS=Homo sap... [more]
CHM1B_CHICK4.290e-2338.26Charged multivesicular body protein 1b OS=Gallus g... [more]
CH1B1_MOUSE7.263e-2338.26Charged multivesicular body protein 1b-1 OS=Mus mu... [more]
CH1B2_MOUSE2.709e-2237.58Charged multivesicular body protein 1b-2 OS=Mus mu... [more]
CHM1B_XENTR2.589e-2136.91Charged multivesicular body protein 1b OS=Xenopus ... [more]
CHM1B_XENLA2.589e-2136.91Charged multivesicular body protein 1b OS=Xenopus ... [more]
CHM1A_PONAB8.293e-2136.69Charged multivesicular body protein 1a OS=Pongo ab... [more]

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Properties
Property NameValue
Genbank description163 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 271 5, mRNA sequence.