GO241502

Overview
NameGO241502
Unique NameGO241502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241502_ssr409 microsatellite GO241502_ssr409:409..420. BLAST: Citrus ESTs to Prunus persica proteins V1
GO241502_ssr497 microsatellite GO241502_ssr497:497..508. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1336 contig Csv1_Contig1336:1058..1609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241502 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 8.813e-35
Identity = 70/100 (70.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:   47 MAISKALIASVLLSPVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSXRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            MAISKALIAS+L+S +V  LV+A+   NS K  GY K  IDCG AC ARCRLS RP LCHRACGTCC RCNCVPPGT GN + C CYA++TTH GRRKCP
Sbjct:    1 MAISKALIASLLISLLVLQLVQAD-VENSQKKNGYAK-KIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of GO241502 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.374e-34
Identity = 66/104 (63.46%), Postives = 78/104 (75.00%), Query Frame = 2
Query:   47 MAISKALIASVLLSPVVFHLVEA----EHTINSSKGTGYPKPSIDCGGACQARCRLSXRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            MAISKAL AS+LLS ++   V++    + T N+     Y    IDCGGAC ARCRLS RP LC+RACGTCCARCNCVPPGT+GNTE CPCYA++TTH  +RKCP
Sbjct:    1 MAISKALFASLLLSLLLLEQVQSIQTDQVTSNAISEAAYSYKKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of GO241502 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 55/104 (52.88%), Postives = 67/104 (64.42%), Query Frame = 2
Query:   47 MAISKALIASVL----LSPVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSXRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            MAI ++ +  +L    L+    H+  AE   +S  G G  K  IDCGG C+ RC  S RPNLC RAC +CC RCNCVPPGTAGN  +CPCYA++TT  GR KCP
Sbjct:    1 MAIFRSTLVLLLILFCLTTFELHVHAAE---DSQVGEGVVK--IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of GO241502 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.474e-23
Identity = 50/94 (53.19%), Postives = 62/94 (65.96%), Query Frame = 2
Query:   65 LIASVLLSPVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSXRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            L+  V L+    H+  A+    +  G G  K  IDCGG C+ RC  S R  LC RAC +CC+RCNCVPPGT+GNT +CPCYA++TTH GR KCP
Sbjct:   11 LLIIVCLTTYELHVHAAD---GAKVGEGVVK--IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of GO241502 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.795e-11
Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = 2
Query:  170 CGGACQARCRLSXRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            C   C+ RC  +   + C + CG CC  C CVP GT GN   CPCY +     G+ KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of GO241502 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.875e-11
Identity = 31/71 (43.66%), Postives = 37/71 (52.11%), Query Frame = 2
Query:  134 SKGTGYPKPSIDCGGACQARCRLSXRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            S+G  +P+   DC   C  RC  +     C   C  CCA+C CVP GT GN + CPCY N  T  G  KCP
Sbjct:   45 SEGRLHPQ---DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
The following BLAST results are available for this feature:
BLAST of GO241502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GASA1_ARATH8.813e-3570.00Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
SNAK2_SOLTU4.374e-3463.46Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA3_ARATH9.141e-2452.88Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH3.474e-2353.19Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
SNAK1_SOLTU6.795e-1142.37Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GAST1_SOLLC8.875e-1143.66Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
back to top
Properties
Property NameValue
Genbank description150 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 256 5, mRNA sequence.