GO241498

Overview
NameGO241498
Unique NameGO241498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241498_ssr2 microsatellite GO241498_ssr2:2..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1455 contig Csv1_Contig1455:1..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241498 vs. ExPASy Swiss-Prot
Match: TAF9B_RAT (Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus GN=Taf9b PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.259e-29
Identity = 58/120 (48.33%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 501
            ++ PRDA ++  +LK MG+ DYEPRVI+Q LE  +RYV  +L DA++YS HA K T+D DDV+LA+Q + + SF+ PP R+ LL++A+ +N+ PLP      G  LPP++  L +PNY+L
Sbjct:   10 KNAPRDALVMAQILKDMGITDYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129          
BLAST of GO241498 vs. ExPASy Swiss-Prot
Match: TAF9_RAT (Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus GN=Taf9 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.869e-29
Identity = 57/120 (47.50%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 501
            + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K T+D DDV+LA+Q + + SF+ PP R+ LL++A+ RN+ PLP      G  LPP++  L +PNY+L
Sbjct:   10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129          
BLAST of GO241498 vs. ExPASy Swiss-Prot
Match: TAF9_MOUSE (Transcription initiation factor TFIID subunit 9 OS=Mus musculus GN=Taf9 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.869e-29
Identity = 57/120 (47.50%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 501
            + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K T+D DDV+LA+Q + + SF+ PP R+ LL++A+ RN+ PLP      G  LPP++  L +PNY+L
Sbjct:   10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129          
BLAST of GO241498 vs. ExPASy Swiss-Prot
Match: TAF9_HUMAN (Transcription initiation factor TFIID subunit 9 OS=Homo sapiens GN=TAF9 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.869e-29
Identity = 57/120 (47.50%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 501
            + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K T+D DDV+LA+Q + + SF+ PP R+ LL++A+ RN+ PLP      G  LPP++  L +PNY+L
Sbjct:   10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129          
BLAST of GO241498 vs. ExPASy Swiss-Prot
Match: TAF9_BOVIN (Transcription initiation factor TFIID subunit 9 OS=Bos taurus GN=TAF9 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.869e-29
Identity = 57/120 (47.50%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 501
            + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K T+D DDV+LA+Q + + SF+ PP R+ LL++A+ RN+ PLP      G  LPP++  L +PNY+L
Sbjct:   10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129          
BLAST of GO241498 vs. ExPASy Swiss-Prot
Match: TAF9B_MOUSE (Transcription initiation factor TFIID subunit 9B OS=Mus musculus GN=Taf9b PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.530e-28
Identity = 57/120 (47.50%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 501
            ++ PRDA ++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K T+D DDV+LA+Q + + SF+ PP R+ LL++A+ +N+ PLP      G  LPP++  L +PNY+L
Sbjct:   10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129          
BLAST of GO241498 vs. ExPASy Swiss-Prot
Match: TAF9B_PONAB (Transcription initiation factor TFIID subunit 9B OS=Pongo abelii GN=TAF9B PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 56/120 (46.67%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 501
            ++ PRDA ++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K  +D DDV+LA+Q + + SF+ PP R+ LL++A+ +N+ PLP      G  LPP++  L +PNY+L
Sbjct:   10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129          
BLAST of GO241498 vs. ExPASy Swiss-Prot
Match: TAF9B_HUMAN (Transcription initiation factor TFIID subunit 9B OS=Homo sapiens GN=TAF9B PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 56/120 (46.67%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 501
            ++ PRDA ++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K  +D DDV+LA+Q + + SF+ PP R+ LL++A+ +N+ PLP      G  LPP++  L +PNY+L
Sbjct:   10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129          
BLAST of GO241498 vs. ExPASy Swiss-Prot
Match: TAF9_DROME (Transcription initiation factor TFIID subunit 9 OS=Drosophila melanogaster GN=e(y)1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 58/132 (43.94%), Postives = 88/132 (66.67%), Query Frame = 1
Query:  106 KRDPAEEMAEGDEDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 501
            K D A+  A+  + +P+DA+++ S+LK + V++YEPRV++Q LE  +RYV  +L DA+VY+ HA K TID DDV+LA +  ++ SF+ P  R VL ++A  RN +PLP      G+ LPP++  L   NY+L
Sbjct:    5 KSDKAKISAQ-IKHVPKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLERHVLAKVADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKL 135          
BLAST of GO241498 vs. ExPASy Swiss-Prot
Match: TAF9_ENCCU (Transcription initiation factor TFIID subunit 9 OS=Encephalitozoon cuniculi GN=TAF9 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.227e-22
Identity = 52/125 (41.60%), Postives = 77/125 (61.60%), Query Frame = 1
Query:  127 MAEGDEDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 501
            MA G+   PRDAK++  +L+S+G+E+ EP+VI Q LE  YRY  DVL DA ++++H G+  I   DVKLA+Q+KV   F  PP R+ L E++   N  PL        I +PP    L++ +Y++
Sbjct:    1 MASGENLAPRDAKVISVILRSLGIEECEPKVIIQLLEFAYRYTTDVLEDALLFAKHTGRTHITTSDVKLALQTKVGRHFVPPPPRQYLSEISTMVNSKPLTIPDGENLIRVPPSSSALLNLDYEV 125          
The following BLAST results are available for this feature:
BLAST of GO241498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TAF9B_RAT5.259e-2948.33Transcription initiation factor TFIID subunit 9B O... [more]
TAF9_RAT6.869e-2947.50Transcription initiation factor TFIID subunit 9 OS... [more]
TAF9_MOUSE6.869e-2947.50Transcription initiation factor TFIID subunit 9 OS... [more]
TAF9_HUMAN6.869e-2947.50Transcription initiation factor TFIID subunit 9 OS... [more]
TAF9_BOVIN6.869e-2947.50Transcription initiation factor TFIID subunit 9 OS... [more]
TAF9B_MOUSE1.530e-2847.50Transcription initiation factor TFIID subunit 9B O... [more]
TAF9B_PONAB5.815e-2846.67Transcription initiation factor TFIID subunit 9B O... [more]
TAF9B_HUMAN5.815e-2846.67Transcription initiation factor TFIID subunit 9B O... [more]
TAF9_DROME7.859e-2543.94Transcription initiation factor TFIID subunit 9 OS... [more]
TAF9_ENCCU6.227e-2241.60Transcription initiation factor TFIID subunit 9 OS... [more]

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Properties
Property NameValue
Genbank description146 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 247 5, mRNA sequence.